FMO05519.5prime Sequence
1218 bp (771 high quality bases) assembled on 2008-08-25
> FMO05519.5prime
CAGTCCACATGAAAAACCAGGATTTGGTGGAATATTTAAGGTCGTGCGGG
GTGTGCGAAATTTGCCAGCTGCGTTACCTGAAGGCCAGAGGCGCGGAGTA
TATAAACATCAATGAGACTTTGCAAAAGTTGGATGTAAAACTAAATGAAA
ATGTGGAAAACGAAGAGCTTGTTATATCCGAAGGGAGTCAACCATCTAAA
AGGGCCCGTCTGGGCGTGTGTTCAACGTGCCTGGGTTTATTCTCCAAAGA
CTTTCAGAATGAGCTGCTCAGCAGCATTTTGGCATCGGATTTCGCGAAAT
ACGATTGCCAGAAAATCGTTCTGGCGATTTGTCTACCGATGTCGCTTCAG
TTGAGACAGCTGGCCATGTGGTTTGCCTTGCGAAGAAGATTTGGACCATC
TATAGACGAAAACAATCCCCCAGACGTGCCTATAAAAGAGGCTGTCAAGC
TGATCCTACACCCTATAATCTGTTAAAAGCTGGCCAAGGTTTACGATGCC
AACGGTCTGATGATCAATATAAACCTCACGCACAGTCTGGAAGGCGAAGA
GGTGGAAAAACTGGTCAAATTAAACGAAGAAGCCTTTCCCGCCAAGGCCT
CGCATCAAAAGCGCATTGAAATTTCGCGAGGTTTACTAAAGAAACAGTAT
CAACCCTCCAAAGTTAAGGCGGAAACCTATGAGAAATATTTTCAGATACC
CTGCTCTAACGTAGAGGAATCTATAAAACTTACTTCCATAGACCTGCAAG
GACCATTGATTTGTGTAGCTGGCGATATCGAAAGCTGAGCAGGGAACTTT
CACATACTCCCTGGATTTTGAATGGCCAACGGCTCATGCAGGACAGTATC
GAGGAAATTATAATTAGGCATGTCGGTCCCCACTTTACAGAGAAGCTGGG
CCATAATCACCGTCATGTCGAGTGCAAGAGATGATGTGACGTCCGATGCC
TGGGAAAGGAAGGCCTTTGTCTAAAATTCAATGCAAATGGAGTTGCCTAA
CTTAAGATGAGCCTTTGCGATGAACTGGCTGTGAAGCGTCTGGTATGAGT
CTAACTCACTCCAGTCGTGCCCGAAGAAGAATAGCCTCCATAAGACCGGA
AAGACCGAAAAGAAGTCTATCCGGCTCTTTGTGCCTGAAAATCCGATCGT
TAGATCGTAACTGCAATACAGGCTACATCCAAGGCCCCATACGAGTTCTT
TCATGCTCCTACTGTCCA
FMO05519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3709-RA | 1699 | CG3709-RA | 59..1207 | 9..1135 | 4740 | 95.5 | Plus |
| CG11455-RJ | 869 | CG11455-RJ | 40..159 | 128..9 | 585 | 99.2 | Minus |
| CG11455-RK | 798 | CG11455-RK | 40..90 | 128..78 | 240 | 98 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 154218..155061 | 968..127 | 3845 | 98.1 | Minus |
| 2L | 23513712 | 2L | 155128..155247 | 128..9 | 585 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:15 has no hits.
FMO05519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:45 Download gff for
FMO05519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 55..1108 | 2..1047 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:53 Download gff for
FMO05519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 71..1124 | 2..1047 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:39 Download gff for
FMO05519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3709-RA | 55..1108 | 2..1047 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:39 Download gff for
FMO05519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 155128..155251 | 2..128 | 96 | | Minus |
| 2L | 154130..155059 | 129..1047 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:45 Download gff for
FMO05519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 154130..155059 | 129..1047 | 96 | <- | Minus |
| arm_2L | 155128..155251 | 2..128 | 96 | | Minus |
