FMO05521.5prime Sequence
636 bp (636 high quality bases) assembled on 2008-08-25
> FMO05521.5prime
CTTATCAGTCGACATGGCCGAAACAGAGACGAAGCACCATCCCGAGCACC
ACGACGACGATGTCCACGATGCCAACTACCAGGCGCCGCCGGAGAAGACC
ATCGAGGAAATAATGGCCGCCGATCAGGAGGATGAGAGCTTGCGGCGCTA
CAAGGAGGCGCTCCTGGGTGCCGCCCAGACCGAGAAAATTATTGTTGAAC
CCAATGATCCCCGAAAAGTTATTGTAAAGAAACTGGCCCTCGTTGTCGAA
GGACGCGACGACATGGAATTGGATCTTACCGGTGACCTTAGTCAGCTGAA
AAAGCAGCTTTTTGTGATCAAAGAAGGTGTTCAGTACAAGGTGCGCATTG
ATTTTATTGTGCAGCGTGAAATAGTCCATGGCCTTAAGTATGTTCAAAAG
ACTTCTCGCTTGGGTGTTAATGTTGACAAGATGAAGCATATGGTTGGCTC
CTATCCGCCGAAGAAGGAGATTCAGTTCTATTTGACGCCCGCCGAGGAGG
CACCTTCAGGCACATTCTCCCGCGGCACCTACTCGGTCAGTTTCGGTCTT
CACGGATGACGACAAGCACATACACCTGGAGTGGGACTGGACCTTTTGAG
ATCAAAAAGGACTGGGCCGCAAGCTTTCTAGACCAT
FMO05521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGDI-RB | 1442 | CG7823-RB | 84..687 | 13..618 | 2980 | 99.7 | Plus |
| RhoGDI-RA | 1540 | CG7823-RA | 182..785 | 13..618 | 2980 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19930830..19931014 | 13..197 | 925 | 100 | Plus |
| 3L | 28110227 | 3L | 19931981..19932175 | 422..618 | 885 | 99 | Plus |
| 3L | 28110227 | 3L | 19931260..19931381 | 305..426 | 595 | 99.2 | Plus |
| 3L | 28110227 | 3L | 19931087..19931197 | 197..307 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:13 has no hits.
FMO05521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:21 Download gff for
FMO05521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGDI-RA | 176..790 | 7..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:31:56 Download gff for
FMO05521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGDI-RA | 112..726 | 7..626 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:28 Download gff for
FMO05521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGDI-RA | 176..790 | 7..626 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:28 Download gff for
FMO05521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19930824..19931014 | 7..197 | 98 | -> | Plus |
| 3L | 19931088..19931197 | 198..307 | 100 | -> | Plus |
| 3L | 19931263..19931377 | 308..422 | 100 | -> | Plus |
| 3L | 19931982..19932180 | 423..626 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:21 Download gff for
FMO05521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19923924..19924114 | 7..197 | 98 | -> | Plus |
| arm_3L | 19924188..19924297 | 198..307 | 100 | -> | Plus |
| arm_3L | 19924363..19924477 | 308..422 | 100 | -> | Plus |
| arm_3L | 19925082..19925280 | 423..626 | 97 | | Plus |
