FMO05526.5prime Sequence
1250 bp (1008 high quality bases) assembled on 2008-08-25
> FMO05526.5prime
CAGTCGACATGGACATATTGAATGAGTTCAGCAATGTATTCTGGAGTACG
CACATTTGGCTGCCGCCGAACACAACCTGGGCGGACATTGCGCCCGGCTC
GCGTCCAGATGTGGTGCACGCCAACTACAAGGACCTCATATGGCCCATTC
CATTCGCCGCTGTTGTCATGCTGGTCCGCTACACGCTGGAGCGTTTCTGG
ATATCGCCCGTAGGCAAATCACTTGGCATACGTAGTTCTAGGCCTAAGAA
AGCGGCAAATGTTCCTATTCTGGAGAAGACCTATGCCAAATCGACGCGAT
TGGACAAGAAAAAGCTGGTTCCGCTGTCCAAGCAGACGGATATGAGCGAG
CGCGAAATCGAGCGCTGGTGGCGTCTACGCAGGGCCCAGGATAAACCGTC
AACGCTGGTGAAGTTCTGCGAGAACACGTGGCGTTGCATCTACTATCTGT
ACAGCTTCATCTTTGGCGTGATCGTGCTGTGGGACAAGCCCTGGTTTTGG
GATGTGAAGAGCTGCTGGTACGGCTACCCGCATCAGTCGATCAGCAATGA
TATCTGGTGGTACTACATGATTTCGATGTCCTTCTACTGGTCACTCACTG
GCACCCAGTTCTTCGATGTGAAACGCAAGGACTTCTGGCAGATGTTCATC
CATCACATGGTCACCCTGCTCCTAATGTCGCTCAGCTGGGTGTGCAATCT
GCATCGCGTCGGTTCGCTCGTCCTAGTCGTTCACGATTGTGCTGACATCT
TCTTGGAGGCCGCCAAACTCACCAAATATGCCAAATATCAGAAGCTCTGC
GATGCAATCTTTGCCATCTTCACAGTGGTGTGGATTGTTACGCGTCTGGG
CTTCTATCCACGCATCATTTTATAGCTCATCCGTGGGAAGCACCGCGCAT
TTCTGCCCATGTTCCCAGCCTACTACATCTTCACTCACTGCTTCTGATGC
TGCTCGTCCTGCACGTCATCTGGACATACATGATCCTCAGGATTGTTGTC
GACCTTTCTGCAGAGGTTTGATGTCCGGTGACTACCGTTCCAGTGATTGT
GAAGATCTCAAAGACGTTCGGGGATGCACGTCTTGACCATGGCTCGGCGC
GCTCCATGAACAAGTCGAATCAGCATGGCCCTATTCGGATAAGAATCTGC
GGGAGGAAACAGATCAGGCGGACAGGATTTGCCACACGGAACGGGAGAGA
GAGCACGCTTTCTAGACACCTTCGTTTTGCGCGCGGGGCCAGGGTAGATG
FMO05526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| schlank-RB | 2487 | CG3576-RB | 636..1786 | 7..1157 | 5210 | 97.5 | Plus |
| schlank-RA | 2201 | CG3576-RA | 350..1500 | 7..1157 | 5210 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6258901..6259237 | 870..534 | 1685 | 100 | Minus |
| X | 23542271 | X | 6259312..6259535 | 536..313 | 1120 | 100 | Minus |
| X | 23542271 | X | 6266407..6266593 | 193..7 | 935 | 100 | Minus |
| X | 23542271 | X | 6259604..6259725 | 314..193 | 610 | 100 | Minus |
| X | 23542271 | X | 6258668..6258796 | 1003..874 | 490 | 96.9 | Minus |
| X | 23542271 | X | 6258407..6258507 | 1118..1020 | 240 | 87.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:36 has no hits.
FMO05526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:46 Download gff for
FMO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| schlank-RA | 345..1475 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:05 Download gff for
FMO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lag1-RB | 630..1760 | 1..1130 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:44 Download gff for
FMO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| schlank-RA | 345..1475 | 1..1130 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:44 Download gff for
FMO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6258650..6258794 | 876..1020 | 93 | <- | Minus |
| X | 6258897..6259234 | 537..875 | 99 | <- | Minus |
| X | 6259312..6259533 | 315..536 | 100 | <- | Minus |
| X | 6259604..6259724 | 194..314 | 100 | <- | Minus |
| X | 6266407..6266598 | 1..193 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:46 Download gff for
FMO05526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6152683..6152827 | 876..1020 | 93 | <- | Minus |
| arm_X | 6152930..6153267 | 537..875 | 99 | <- | Minus |
| arm_X | 6153345..6153566 | 315..536 | 100 | <- | Minus |
| arm_X | 6153637..6153757 | 194..314 | 100 | <- | Minus |
| arm_X | 6160440..6160631 | 1..193 | 98 | | Minus |
