Clone FMO05527 Report

Search the DGRC for FMO05527

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:55
Well:27
Vector:pMK33-CFH-BD
Associated Gene/TranscriptArp14D-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05527.5prime Sequence

1201 bp (961 high quality bases) assembled on 2008-08-25

> FMO05527.5prime
CAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTGATAACGGC
ACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCCACCCACAT
TTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAACAAAATCG
GCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCTCACAGCTG
CGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTGGTGCGCAA
CTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCCCAAAAAGA
TGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGCCGCCCATG
AATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTCGAGAAATA
TGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGACGCTATATG
CCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATGGTGTAACG
CATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTGACGCGACG
ATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAAGTTACTGT
TACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAACGGTTCGC
ATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAGATGGAGCA
GCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACACGCTACCCG
ACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGCCAGAGGCT
CTGTTCCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATTGCGGACT
GGCCTTCAACACCATCCAGGCGGCAGACATCGACATACGGCCCGAACTTC
TACAGCACCATAGTTCTGTCCGGCGGCTCCACCATGTATCCGGGTCTCCC
AGTCGGCTGGAGCGTGAAGATCAACAGCTGTACTGGAAGCGGGTACTCAG
GACGAACCGGAAGCTGCGAATTCAAATACCGCATTGAGATCCACCGCGAA
GCAGATTGTCTTATCGCGACTGTCTGCGAGTGACAGATCGCGACGCTCTG
ATTCAACCGGAATTAGGAACGTTCAGAATGCAAAGTCGTCAGAATCGTCC
CAGCTTCGACTTCATTGACCGGTCCAGTAACTTCTATCCAACTAACTATC
A

FMO05527.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
Arp2-RB 2475 CG9901-RB 338..1389 8..1053 4790 97.9 Plus
Arp2-RA 2219 CG9901-RA 577..1628 8..1053 4790 97.9 Plus
Arp2-RC 2217 CG9901-RC 560..1626 8..1053 4630 96.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16549501..16549908 999..592 1670 96.1 Minus
X 23542271 X 16550246..16550467 387..166 1110 100 Minus
X 23542271 X 16549977..16550188 593..382 1060 100 Minus
X 23542271 X 16552339..16552451 168..56 565 100 Minus
X 23542271 X 16553344..16553392 56..8 245 100 Minus
Blast to na_te.dros performed 2014-11-28 21:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
invader6 4885 invader6 INVADER6 4885bp 1215..1270 460..405 127 69.6 Minus

FMO05527.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:17 Download gff for FMO05527.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 569..1641 1..1062 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:02 Download gff for FMO05527.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp14D-RB 325..1397 1..1062 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:54 Download gff for FMO05527.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp2-RA 569..1641 1..1062 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:54 Download gff for FMO05527.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16549481..16549906 594..1018 95 <- Minus
X 16549977..16550186 384..593 100 <- Minus
X 16550250..16550465 168..383 100 <- Minus
X 16552340..16552450 57..167 100 <- Minus
X 16553344..16553396 1..56 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:17 Download gff for FMO05527.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16443514..16443939 594..1018 95 <- Minus
arm_X 16444010..16444219 384..593 100 <- Minus
arm_X 16444283..16444498 168..383 100 <- Minus
arm_X 16446373..16446483 57..167 100 <- Minus
arm_X 16447377..16447429 1..56 92   Minus