FMO05527.5prime Sequence
1201 bp (961 high quality bases) assembled on 2008-08-25
> FMO05527.5prime
CAGTCGACATGGACAGCAAGGGTCGAAATGTTATCGTCTGTGATAACGGC
ACTGGGTTCGTTAAGTGCGGATATGCCGGCAGCAATTTCCCCACCCACAT
TTTTCCCTCGATGGTGGGACGACCCATGATTCGGGCGGTCAACAAAATCG
GCGATATCGAAGTCAAGGATCTGATGGTCGGCGATGAGGCCTCACAGCTG
CGATCCCTGCTGGAGGTCTCCTATCCGATGGAGAACGGTGTGGTGCGCAA
CTGGGACGACATGTGCCACGTGTGGGACTACACGTTCGGTCCCAAAAAGA
TGGACATCGATCCGACGAACACAAAAATCCTGCTAACCGAGCCGCCCATG
AATCCCACAAAGAATCGCGAGAAGATGATTGAGGTGATGTTCGAGAAATA
TGGCTTCGATTCGGCGTACATTGCCATCCAGGCCGTGCTGACGCTATATG
CCCAGGGTCTGATCTCTGGCGTGGTGATCGATTCGGGCGATGGTGTAACG
CATATATGTCCCGTCTACGAGGAGTTTGCCCTGCCCCATCTGACGCGACG
ATTGGACATTGCCGGTCGGGATATCACTCGCTATTTGATTAAGTTACTGT
TACTACGTGGCTACGCTTTCAATCATTCCGCCGACTTCGAAACGGTTCGC
ATAATGAAGGAGAAGCTCTGCTACATTGGCTACGACATCGAGATGGAGCA
GCGTTTGGCCCTGGAGACGACGGTGCTGGTGGAATCGTACACGCTACCCG
ACGGTCGTGTTATCAAGGTCGGTGGCGAGAGATTTGAGGCGCCAGAGGCT
CTGTTCCCAGCCGCATTTGATCAACGTCGAGGGACCGGGCATTGCGGACT
GGCCTTCAACACCATCCAGGCGGCAGACATCGACATACGGCCCGAACTTC
TACAGCACCATAGTTCTGTCCGGCGGCTCCACCATGTATCCGGGTCTCCC
AGTCGGCTGGAGCGTGAAGATCAACAGCTGTACTGGAAGCGGGTACTCAG
GACGAACCGGAAGCTGCGAATTCAAATACCGCATTGAGATCCACCGCGAA
GCAGATTGTCTTATCGCGACTGTCTGCGAGTGACAGATCGCGACGCTCTG
ATTCAACCGGAATTAGGAACGTTCAGAATGCAAAGTCGTCAGAATCGTCC
CAGCTTCGACTTCATTGACCGGTCCAGTAACTTCTATCCAACTAACTATC
A
FMO05527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp2-RB | 2475 | CG9901-RB | 338..1389 | 8..1053 | 4790 | 97.9 | Plus |
Arp2-RA | 2219 | CG9901-RA | 577..1628 | 8..1053 | 4790 | 97.9 | Plus |
Arp2-RC | 2217 | CG9901-RC | 560..1626 | 8..1053 | 4630 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16549501..16549908 | 999..592 | 1670 | 96.1 | Minus |
X | 23542271 | X | 16550246..16550467 | 387..166 | 1110 | 100 | Minus |
X | 23542271 | X | 16549977..16550188 | 593..382 | 1060 | 100 | Minus |
X | 23542271 | X | 16552339..16552451 | 168..56 | 565 | 100 | Minus |
X | 23542271 | X | 16553344..16553392 | 56..8 | 245 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
invader6 | 4885 | invader6 INVADER6 4885bp | 1215..1270 | 460..405 | 127 | 69.6 | Minus |
FMO05527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:17 Download gff for
FMO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 569..1641 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:02 Download gff for
FMO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp14D-RB | 325..1397 | 1..1062 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:54 Download gff for
FMO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp2-RA | 569..1641 | 1..1062 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:54 Download gff for
FMO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16549481..16549906 | 594..1018 | 95 | <- | Minus |
X | 16549977..16550186 | 384..593 | 100 | <- | Minus |
X | 16550250..16550465 | 168..383 | 100 | <- | Minus |
X | 16552340..16552450 | 57..167 | 100 | <- | Minus |
X | 16553344..16553396 | 1..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:17 Download gff for
FMO05527.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16443514..16443939 | 594..1018 | 95 | <- | Minus |
arm_X | 16444010..16444219 | 384..593 | 100 | <- | Minus |
arm_X | 16444283..16444498 | 168..383 | 100 | <- | Minus |
arm_X | 16446373..16446483 | 57..167 | 100 | <- | Minus |
arm_X | 16447377..16447429 | 1..56 | 92 | | Minus |