FMO05535.5prime Sequence
1225 bp (1038 high quality bases) assembled on 2008-08-25
> FMO05535.5prime
CAGTCGACATGACGACAGCTCAGCACCAACACTACACCGTCGAGGTGGGG
GACACCAACTTCACCATCCACAGTCGGTACATTAATCTACGGCCCATAGG
ATCAGGTGCCCAAGGAATAGTATGCGCCGCTTACGATACTATCACCCAGC
AAAATGTGGCGATTAAGAAACTATCTCGACCATTCCAAAATGTAACCCAT
GCCAAGCGAGCATATAGGGAATTCAAGCTAATGAAGCTTGTTAACCATAA
AAACATAATTGGCTTACTTAATGCTTTTACGCCGCAAAGGAACTTGGAAG
AGTTTCAGGATGTCTACCTGGTCATGGAGCTGATGGACGCTAATCTCTGC
CAGGTCATCCAAATGGACTTGGATCACGACAGAATGTCCTATTTGCTTTA
TCAAATGTTGTGCGGAATAAAACATTTACACTCAGCAGGAATTATTCACA
GAGACTTAAAGCCATCCAATATAGTTGTAAAGGCCGACTGCACTCTAAAA
ATTTTGGATTTCGGTCTGGCACGTACTGCAGGAACTACCTTTATGATGAC
TCCCTATGTGGTCACCCGATATTACAGGGCTCCAGAGGTCATTTTGGGCA
TGGGATACACAGAGAACGTGGACATATGGTCCGTCGGTTGCATTATGGGC
GAAATGATACGGGGCGGTGTGCTGTTTCCTGGAACGGATCATATAGATCA
GTGGAAATAAAATTATTGAGCAATTAGGTACACCATCACCCTCGTTTATG
CAACGGTTACAGCCAACCGTCCGAAACTATGTGGAAAATCGTCCTAGATA
CACTGGATACTCATTTGATAGACTTTTCCCCGATGGCTTGTTTCCAAATG
AAAATAATCAGAATAGCCGCCGGAAAGGCTTCTGACGCTAGAAATCTTCT
TAGTAAAATGCTAGTCATTGATCCAGAGCAGCGGATATCTGTGGACGAGC
TTTGAAGCATGAATATATCAACGTGTGTTATGATGCTGAGGAAGTGGATG
CTCCCGCTCGGAGCCATATGATCACAAGCGTGACGAAAGGAAACCACTGT
GAGCATTGAAGGACTAATCTATGGAGAAGTCATGGACTACGAAACACCAT
TACAATAATAACGCGGCAGCCTTCTGACATTCGTTTGGGCGCCGGTCCAG
TATGCCTACCTATTAGTCTATCTATATACATATGACAAGGAATCACGTGC
ATGTGCACCTATGGATGCTGTGTGG
FMO05535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bsk-RE | 1655 | CG5680-RE | 391..1498 | 9..1110 | 5135 | 98.2 | Plus |
| bsk-RF | 1797 | CG5680-RF | 533..1640 | 9..1110 | 5135 | 98.2 | Plus |
| bsk-RB | 1535 | CG5680-RB | 271..1378 | 9..1110 | 5135 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10247852..10248136 | 1002..718 | 1300 | 98.6 | Minus |
| 2L | 23513712 | 2L | 10248197..10248461 | 718..453 | 1280 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10248524..10248722 | 453..255 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 10248785..10248915 | 254..124 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 10249095..10249210 | 124..9 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:20 has no hits.
FMO05535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:24 Download gff for
FMO05535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsk-RB | 262..1378 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:00 Download gff for
FMO05535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsk-RB | 240..1356 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:31 Download gff for
FMO05535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bsk-RB | 262..1378 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:31 Download gff for
FMO05535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10247852..10248135 | 719..1002 | 98 | <- | Minus |
| 2L | 10248197..10248461 | 453..718 | 99 | <- | Minus |
| 2L | 10248525..10248722 | 255..452 | 100 | <- | Minus |
| 2L | 10248785..10248914 | 125..254 | 100 | <- | Minus |
| 2L | 10249095..10249219 | 1..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:24 Download gff for
FMO05535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10247852..10248135 | 719..1002 | 98 | <- | Minus |
| arm_2L | 10248197..10248461 | 453..718 | 99 | <- | Minus |
| arm_2L | 10248525..10248722 | 255..452 | 100 | <- | Minus |
| arm_2L | 10248785..10248914 | 125..254 | 100 | <- | Minus |
| arm_2L | 10249095..10249219 | 1..124 | 97 | | Minus |
