FMO05536.5prime Sequence
1231 bp (964 high quality bases) assembled on 2008-08-25
> FMO05536.5prime
CAGTCGACATGTTTCTGTTTCTGTTTCTTCTCTGGTTGTTGTTATCGCTT
GTGTTGGTGGCAGTACTCTCTTTCCTTTTCCTGAGGCAATGGTTGCTTGG
CCGGAAGAATAAGTTGCACACATCGTCGGAAAATGGCATCAACGTGGGCA
TTTTTCACCCGTATTGCAACGCGGGTGGCGGCGGAGAACGCGTCTTGTGG
TGCGCCGTGAGAGCACTACAGGAAAAGTACCAGAACGCCAGGATGGTAAT
CTACACAGGCGACATAGACGCTTCTCCCAATTCCATACTGCAAAAGGCCA
AGAATGTCTTCAACATTGCCGTCGATAGTGACAATGTGAAGTTCGTCTTC
CTGAAGCAACGCCACTGGATCGAGGCCAAGAACTATCCTCATTTCACTCT
GCTGGGCCAGAGCATTGGATCGATGGTCGTGGGTCTGGAGGCACTCTGCA
GGTTTCCGCCCGACATCTACATCGACACCATGGGATACGCCTTTACGTAT
CCTCTGTTCCGCTACTTGGCCCAGTCCAAGGTGGGCTGCTATGTTCACTA
TCCGGTTATTAGCACCGATATGCTGAAGAGGGTTCAGCAGCGACAGATGT
CGCACAACAACAAGAAGTACGTGGCGAGGAACCCCTTTCTCACCTGGACT
AAGCTTGCCTACTACCGCCTCTTCTCAAGAATGTACAAGTGGGTTGGCTG
TTGTGCTGAGACTATCATGGTGAACTCCTCGTGGACCGAGAATCATATTC
TGCAACTGTGGGATGTGCCCTTCAAAACACACCGGGTTTACCCTCCGTGC
GAGGTTAGTCACCTAAAGAGCCTTCAGCACACGGAAAAAGGCGACGAATT
CATCATACTGTCTGTCGGACAGTTCCCGCCCGGAGAAAGACCATCCCCTC
CAGCTGCAGGCCATATACGAGCTCCGAACTCTCTTGGCCCAGACGAGGCC
TTTTGGAACCAAAATTAGTTGGTTATTGGTGGGCTCCTGGCCGAAATGAA
GATGACTACGAGCGGTTGAAAAACTGCAGGACCTGACAAGCATCTGTCGC
TGACAAACATGGTGCCATTTAATGTGGAATGTCCCATACGAAGAACTTTC
TAAGTGGATCCAACCTGCCCATTGGCATTCCCACTAGTGTGAACAAACTT
GCACTCGCATCGTCAGTCTATGGCTCCGTGACCTTAATAGTGGTGTGACC
ACAAAGGTCATGGGGGCCATATGTCTGACAT
FMO05536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11306-RB | 1994 | CG11306-RB | 270..1468 | 9..1204 | 5140 | 96.2 | Plus |
| CG11306-RA | 1563 | CG11306-RA | 94..1292 | 9..1204 | 5140 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21626940..21627400 | 220..680 | 2305 | 100 | Plus |
| 3L | 28110227 | 3L | 21627462..21627918 | 681..1136 | 1575 | 93.5 | Plus |
| 3L | 28110227 | 3L | 21626432..21626625 | 29..222 | 970 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:36:25 has no hits.
FMO05536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:51 Download gff for
FMO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11306-RA | 85..1156 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:02 Download gff for
FMO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11306-RA | 72..1143 | 1..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:45 Download gff for
FMO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11306-RA | 85..1156 | 1..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:45 Download gff for
FMO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21626942..21627400 | 222..680 | 100 | -> | Plus |
| 3L | 21626432..21626624 | 29..221 | 100 | -> | Plus |
| 3L | 21627462..21627852 | 681..1071 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:51 Download gff for
FMO05536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21619532..21619724 | 29..221 | 100 | -> | Plus |
| arm_3L | 21620042..21620500 | 222..680 | 100 | -> | Plus |
| arm_3L | 21620562..21620952 | 681..1071 | 96 | | Plus |
