FMO05537.5prime Sequence
619 bp (619 high quality bases) assembled on 2008-08-25
> FMO05537.5prime
CCAGCTGTGGGAAACGGGACGAGGGCGTTGATTCTGGTCGGTGGTTATGG
GACCCGGCTGCGACCCCTGACCCTCAGCACGCCCAAGCCACTGGTGGAGT
TTGCCAATAAGCCGATTCTTCTCCACCAACTGGAGGCACTCGTCGATGCG
GGATGTCGTCAGGTTATTTTAGCCGTCAGCTATCGAGCCGAGCAAATGGA
AAAGGAGCTTAAAGTCGAAGCCAAGAAACTGGGCGTGGAATTGATCTTCT
CACACGAGACGGAACCCCTGGGAACAGCTGGACCTCTGGCCCTAGCAAAA
ACGATTTTAGCAGCCAGCTCAGAGCCATTTTTCGTGCTCAATTCGGACGT
TATATGCGATTTTCCATTTAAACAACTAGTGCAATTCCATTGTAATCACG
GAAAAGAAGGCACAATTGTTGTCACAAAGGTCGAAGAACCATCCAAATAC
GGAGTTGTGCTGTACGATGAGAACGGCTGTATAAAAAACTTTATTGAAAA
AGCCACAAGAGTTCGTTAGCAATAAAATCAATGCCGGCATTTACATCTTT
AATCCCTCCGTGCTTGACCGGATCAAGTTTAAGCCCACATCAATAGAGAA
GGAGGTGTTCCCTGAAATG
FMO05537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1129-RE | 2499 | CG1129-RE | 1277..1894 | 1..619 | 3010 | 99.4 | Plus |
| CG1129-RD | 1612 | CG1129-RD | 177..794 | 1..619 | 3010 | 99.4 | Plus |
| CG1129-RA | 1715 | CG1129-RA | 280..897 | 1..619 | 3010 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4814236..4814694 | 160..619 | 2190 | 98.9 | Plus |
| 3R | 32079331 | 3R | 4813815..4813978 | 1..164 | 820 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\spock | 4952 | Dmir\spock SPOCK 4952bp Derived from AY144571. | 2982..3035 | 251..304 | 108 | 66.7 | Plus |
FMO05537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:52 Download gff for
FMO05537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RB | 419..1036 | 1..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:21 Download gff for
FMO05537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RB | 418..1035 | 1..619 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:45 Download gff for
FMO05537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1129-RA | 280..897 | 1..619 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:45 Download gff for
FMO05537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4813815..4813976 | 1..162 | 100 | -> | Plus |
| 3R | 4814239..4814694 | 163..619 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:52 Download gff for
FMO05537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 639537..639698 | 1..162 | 100 | -> | Plus |
| arm_3R | 639961..640416 | 163..619 | 99 | | Plus |
