FMO05538.5prime Sequence
1227 bp (943 high quality bases) assembled on 2008-08-25
> FMO05538.5prime
CAGTCGACATGCAGTCGCGCAGCAAGTCCGATATGAAGCCCATACGAAAG
GAGATCCTCAATCCGGGAAACGCCTACATCGAGCTAACCCCGGGCACCAG
GGTGAAGTTCCACTTTCAAACGCGGAGGGCCGGCGACAGTCGCATCATCG
ATGATAGCCGCAAGATGGAGAAGCCCATGGAGCTGGTCCTGGGGAAGAAG
TTTAAGCTAGAGGTCTGGGAGCTGATTGTGCAGCAGATGTCCCTTAACGA
AGTGGCCAAGTTCACGGTACATAAGTCGCTCTGCGCTCAATATCCTTTTA
TATCCAAGACCCTGCGGGACATTGGCAAGAAACCGGAGGAGCGACGTCAC
TGCTGCGGAATGACATTGCAGAACGAGGGCATTGGGTACACCGACCTGGA
TGAGCTGCTGCAAAATCCTTCCGATCTGGAGTTCATCATTGAACTGTTCT
CCATTGAGCTGCCCGAGCAGTACGAAAAAGAGCGCTGGCAGATGTCCGAC
GACGAAAAGATGCTGGCCACCAGTACGCTGCGCGAACGGGGCAACAACTT
CTATAAGGCCAGTCGGTTCACAGAGGCGGAGACCTGCTACCGCGAGGCTG
TCGGAATTGTGGAGCAGCTGATGCTAAAGGAGAAGCCGCACGACGAGGAG
TGGCAGGAGCTGGCGGCCATCAAGACACCGCTGTTGTTGAACTACGCGCA
ATGTCGGTTGATCGCCGGCGACTTCTACGCTGTGATCGAGCACTGCAACG
AGGTGCTCACCCTGGATCCGCGCAATGTCAAGGCACTTTTTCGTCGGGCC
AGGCCCATGCGGGTGCCTGGAATCCAGCACAGGCACGTCGCGACTTCCTC
GACGCCTTGGCCTTGGACGCCAGCCTCAAGTCGACCGTGTCTAAGAGCCC
AAGTCCATCGAGGATCAGCAGCAGGCAGTTACGTCCAGGATCGCATCACA
TGCAAAGCTCTTTCGCCAAGCTTTCTAGACCATTCGTTGGCGCGCGGGCC
AGTAGTGGTCTATCATTATCATAATCATAATCATATACACTAGCTAGGAG
ATCCTGATATGACTAGTGCTTGATCCACCAATAAAACGCGGCGCAACGAG
CGTTCTGAACAATCGATGAATCTGAGTCTATACTGGATCTTACACGGATC
CAGCGAACTGATTCCATTACGCCGCCTGACACTCACGCGAGATACGTGTA
ATCTATTGCATCTACTTGCCGCAGTGT
FMO05538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1847-RC | 1776 | CG1847-RC | 78..1036 | 9..962 | 4640 | 99.3 | Plus |
| CG1847-RA | 1776 | CG1847-RA | 78..1036 | 9..962 | 4640 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11869739..11870410 | 278..946 | 3180 | 99.3 | Plus |
| X | 23542271 | X | 11869481..11869658 | 101..278 | 890 | 100 | Plus |
| X | 23542271 | X | 11869247..11869343 | 9..105 | 485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:09 has no hits.
FMO05538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:33 Download gff for
FMO05538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1847-RA | 70..1036 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:23 Download gff for
FMO05538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1847-RA | 52..1018 | 1..962 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:09 Download gff for
FMO05538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1847-RA | 70..1036 | 1..962 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:09 Download gff for
FMO05538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11869239..11869339 | 1..101 | 97 | -> | Plus |
| X | 11869482..11869658 | 102..278 | 100 | -> | Plus |
| X | 11869740..11870439 | 279..972 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:33 Download gff for
FMO05538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11763272..11763372 | 1..101 | 97 | -> | Plus |
| arm_X | 11763515..11763691 | 102..278 | 100 | -> | Plus |
| arm_X | 11763773..11764472 | 279..972 | 97 | -> | Plus |
