FMO05539.5prime Sequence
359 bp (359 high quality bases) assembled on 2008-08-25
> FMO05539.5prime
CAGTCGACATGCCAGATTTGCGGATCCCGAGCCAGCGTCTCCGGACAGCG
TTGATGGAATCGAAACGGAGTCACTGGAGGCGCGGATTGAGGCCTTCAAG
CAAAATCCCCAGAACATGGCCGCGTTGCGGGAGGCGCTCGACGATGTGCT
CCTGCGGGCTGAGACGGAGGCGAACAGGCGGGCAGTTGAGAGCCAGAAAT
CGCAACAGGGCAAGGAAAAACGACCGAGTAAGTATACGCAGTGTGGTTCA
GTACATTTCACTTCTTAGCTATTTGGATAGTGTATTGCTTTTCCCTTTCG
AGCACTTCAGCGCAAACCCTTGCCAAGTGCTGGCCGCTGAAGCAAGCTTT
CTAGACCAT
FMO05539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:59:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9368-RD | 2423 | CG9368-RD | 144..477 | 8..341 | 1670 | 100 | Plus |
| CG9368-RA | 1828 | CG9368-RA | 144..365 | 8..229 | 1110 | 100 | Plus |
| CG9368-RB | 1813 | CG9368-RB | 144..363 | 8..227 | 1100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:59:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19601776..19601977 | 8..209 | 1010 | 100 | Plus |
| 3L | 28110227 | 3L | 19602039..19602174 | 206..341 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:59:32 has no hits.
FMO05539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:55 Download gff for
FMO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 138..477 | 1..341 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:24 Download gff for
FMO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RC | 117..456 | 1..341 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:35 Download gff for
FMO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9368-RD | 138..477 | 1..341 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:35 Download gff for
FMO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19601770..19601976 | 1..208 | 98 | -> | Plus |
| 3L | 19602042..19602174 | 209..341 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:55 Download gff for
FMO05539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19594870..19595076 | 1..208 | 98 | -> | Plus |
| arm_3L | 19595142..19595274 | 209..341 | 100 | | Plus |
