FMO05540.5prime Sequence
371 bp (371 high quality bases) assembled on 2008-08-25
> FMO05540.5prime
CAGTCGACATGCTCCACTCCGTCGTTAAGGGCGGCTGCCAGCTCGCCGTT
GAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCTCGTGCTCCAGGA
AAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATTGCGTACGCCAGC
AGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCCCACAAAGACGAC
CTGAAATGGGTTTGTTGCTCAGTCTACGAGGATATGTATGTAACGAAAAT
TGATACTTACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTATG
GAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCTTC
GCGGCAAGCTTTCTAGACCAT
FMO05540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fbl-RG | 2352 | CG5725-RG | 1324..1516 | 201..9 | 965 | 100 | Minus |
fbl-RF | 1370 | CG5725-RF | 801..993 | 201..9 | 965 | 100 | Minus |
fbl-RE | 2386 | CG5725-RE | 1358..1550 | 201..9 | 965 | 100 | Minus |
fbl-RG | 2352 | CG5725-RG | 1232..1326 | 353..259 | 475 | 100 | Minus |
fbl-RF | 1370 | CG5725-RF | 709..803 | 353..259 | 475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20390733..20391077 | 353..9 | 1725 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:34 has no hits.
FMO05540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:28 Download gff for
FMO05540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 1266..1357 | 262..353 | 100 | == | Minus |
fbl-RE | 1358..1555 | 1..201 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:25 Download gff for
FMO05540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33969-RB | 2262..2612 | 1..353 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:38 Download gff for
FMO05540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fbl-RE | 1266..1357 | 262..353 | 100 | == | Minus |
fbl-RE | 1358..1555 | 1..201 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:38 Download gff for
FMO05540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20390733..20391082 | 1..353 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:28 Download gff for
FMO05540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20383833..20384182 | 1..353 | 98 | | Minus |