Clone FMO05540 Report

Search the DGRC for FMO05540

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:55
Well:40
Vector:pMK33-CFH-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05540.5prime Sequence

371 bp (371 high quality bases) assembled on 2008-08-25

> FMO05540.5prime
CAGTCGACATGCTCCACTCCGTCGTTAAGGGCGGCTGCCAGCTCGCCGTT
GAACTGCAGCAGGCAACCCAGAGCCCCAAAGTATCCCTCGTGCTCCAGGA
AAAGACCCTTCATTGTGCCATTGGACCAGAACTCCATTGCGTACGCCAGC
AGCTTCATGGAAATGGGGTTAACTCGCAGAAAGTTGCCCACAAAGACGAC
CTGAAATGGGTTTGTTGCTCAGTCTACGAGGATATGTATGTAACGAAAAT
TGATACTTACCCTATCGATCTTCTCATTCAGCGCGCACATCCTTGCTATG
GAGCCGATATTATTCGTTATGGTGACCAGAGTGGCGTTGGCCAGATCTTC
GCGGCAAGCTTTCTAGACCAT

FMO05540.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
fbl-RG 2352 CG5725-RG 1324..1516 201..9 965 100 Minus
fbl-RF 1370 CG5725-RF 801..993 201..9 965 100 Minus
fbl-RE 2386 CG5725-RE 1358..1550 201..9 965 100 Minus
fbl-RG 2352 CG5725-RG 1232..1326 353..259 475 100 Minus
fbl-RF 1370 CG5725-RF 709..803 353..259 475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20390733..20391077 353..9 1725 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:08:34 has no hits.

FMO05540.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:28 Download gff for FMO05540.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 1266..1357 262..353 100 == Minus
fbl-RE 1358..1555 1..201 98   Minus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:25 Download gff for FMO05540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33969-RB 2262..2612 1..353 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:38 Download gff for FMO05540.5prime
Subject Subject Range Query Range Percent Splice Strand
fbl-RE 1266..1357 262..353 100 == Minus
fbl-RE 1358..1555 1..201 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:38 Download gff for FMO05540.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20390733..20391082 1..353 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:28 Download gff for FMO05540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20383833..20384182 1..353 98   Minus