FMO05542.5prime Sequence
1169 bp (851 high quality bases) assembled on 2008-08-25
> FMO05542.5prime
CAGTCGACATGTTTGGAAGACAAAGTGGACTGGGTAGTTCCAGCAACAGC
AGCAACCTGGTGGAGTTCCGCGCAGGTCGCATGAACATGGTGGGCAAGAT
GGTGCATCCGGATCCGCGCAAGGGCCTGGTCTACATGACCCAGAGTGACG
ATGGCCTGATGCACTTCTGCTGGAAGGATCGCACCTCCGGCAAGGTGGAG
GACGATCTCATCGTCTTCCCCGATGACTTCGAGTACAAGCGCGTCGATCA
GTGCAAGACGGGCCGTGTCTATGTGCTTAAGTTCAAGTCATCGACACGCC
GCATGTTCTTCTGGATGCAGGAGCCCAAGACGGACAAGGACGACGAGCAG
TGCCGCCGCATCAACGAGCTGCTGAACAACCCTCCATCCGCCCACCAGCG
CGGCGGCGGCGGCAGCAACGACGGCGACCTCCAGTACATGCTCAACAACA
TGTCGCAGCAGCAGCTGATGCAGCTCTTCGGCGGCGTTGGCCAGATGGGT
GGTCTCAGCTCGCTGCTGGGCCAAATGAACTCCCGGACGCCCTCGTCGCG
CAACACCTCCTCATCGGGTGGCGGTGGGGCATCGGCCTTGCAGACGCCCC
GAAAACGTCAGTGTGCCGCGCACTCCGAGCGCTCCATCGAAATCGGGCAG
CAGCCGCAGCAGCAGCAATGTGAACTCGCAGGTCGGCGAAGTGCCGGCTC
CTCCGTTGATGCGGATGCCCCCGGACGATCCCTGAATATTGACCTATCGA
CGGCCCTACCCGGCGCCGATGCCATCAATCAGATAATTGCCGATCCGGAG
CATGTCAAGACGCTGATCGTGCACCTGCCCGAGTCGGAGGATGTGGACGA
TGATCGCAAGCAGCAGATCAAGGACATATCACCTCCCCGCAATTTCCAGC
AGGCTCTGGCCCAGTTCTCAGTGCCCTGCAATCGCCCAGCTGGAACTGTG
ATCAGCAATCCAGTTGTCCACGAAGCAATGCGCCGCCTTCTCTGCAATCT
AAGATTTGTGCTGCTCTGAAAAGGTCTGCCCCGTGCCACATGGTGGCCAT
CCTCCGCAGCAAGAAAAGCACGATCGAATCTACTCATGATCATGGAAAAC
GATCGTACGAACGAGAGAAACAAGGAACTTAGACATTCTTTGGGCCGGAC
CGAATGACCAATAATCATA
FMO05542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn13-RF | 1390 | CG13349-RF | 120..1159 | 8..1032 | 4670 | 97.7 | Plus |
| Rpn13-RB | 1390 | CG13349-RB | 120..1159 | 8..1032 | 4670 | 97.7 | Plus |
| Rpn13-RA | 1377 | CG13349-RA | 107..1146 | 8..1032 | 4670 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13959568..13960089 | 529..8 | 2610 | 100 | Minus |
| 2R | 25286936 | 2R | 13958888..13959100 | 934..723 | 905 | 98.1 | Minus |
| 2R | 25286936 | 2R | 13959204..13959398 | 724..530 | 880 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:50 has no hits.
FMO05542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:05 Download gff for
FMO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RA | 98..1091 | 1..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:28 Download gff for
FMO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13349-RA | 98..1091 | 1..987 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:55 Download gff for
FMO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn13-RA | 98..1091 | 1..987 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:55 Download gff for
FMO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13959205..13959398 | 530..723 | 98 | <- | Minus |
| 2R | 13958831..13959099 | 724..987 | 95 | <- | Minus |
| 2R | 13959568..13960092 | 1..529 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:05 Download gff for
FMO05542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9846336..9846604 | 724..987 | 95 | <- | Minus |
| arm_2R | 9846710..9846903 | 530..723 | 98 | <- | Minus |
| arm_2R | 9847073..9847597 | 1..529 | 99 | | Minus |
