FMO05543.5prime Sequence
1193 bp (1025 high quality bases) assembled on 2008-08-25
> FMO05543.5prime
CAGTCGACATGTCCTCGTCGTCGACGTCCGGCGGCCGGAAGCAACCCACT
GCTGTGTCGCGCATGAAGCAGGACTATATGCGCCTCAAGCGGGATCCCCT
GCCGTACATAACCGCCGAGCCGCTGCCCAACAACATCCTCGAGTGGCACT
ACTGCGTCAAGGGGCCGGAGGACTCGCCCTACTACGGCGGCTACTACCAC
GGCACCCTGCTCTTTCCGCGCGAGTTCCCATTCAAGCCGCCATCCATCTA
CATGCTGACGCCGAACGGTCGCTTCAAGACCAACACCAGACTGTGTTTGA
GTATATCAGATTTTCATCCGGACACTTGGAACCCGACTTGGTGCGTAGGC
ACCATTCTCACTGGACTGCTGAGCTTCATGCTGGAGAGCACACCCACACT
CGGATCCATCGAATCATCGAACTATGACAAGCAAATGTTTGCTCAAAAAT
CACTAGCATTTAACCTGCGCAACACCAACTTCTGTGAGCTGTTTCCGGAG
ATAGTCGAAGAGATCAAGCAGCGGCTGCGAGGAACACAGGCGGCAGCTGC
TGTGGACGGACCCGCTGCCAATGGAGTAAAGCGTTCCAACGGACTGGCCA
ACGGAGCGAGCCTGGCATCTGCGGATGGCAATCTGGCGGTGGGCGGCTTG
GCCAATCCACTGAATGCAGCGGACGCAATCGATGGCGGGGCGGCGGGTCA
GGCGGATTTGGCCAGCGGCGGAGGAGCGGCGGTCCAGAATAGTGCACGGA
ACTCCTATCTAAACTGGCAGTCCGTCTATTCAAACCTGGTGATCATTATC
TGCTTTGCATTTTTGCCCTCATTGTTAATTACGTGATCAAGAACCTGAAT
CAGAAGCAAGCTTTCTAGACCATTCGTTTGGCGCCGCGGGCCCAGGTAGT
GGTCATATCATATCATATCATAATCATATCACACTAGCTAGAGATCCTGT
CATGACTAGTGCTTGATCTCACATAAAACGCCCGCGCACGAGCGTCTGAC
ATCAGATGAGTCTGAGTCATACTGATCATCAAAGGAATCAGCGAGCTCGA
ATCAATAGGCCGCTGCCTCATCGCAGTACTGTTTGTATTCATTAAGTATT
CGCGCACTGAAGCATCAACGCCATGATGACTGATGCAGTAGACCTGGCTT
GCTATATTTGCCATGTGAAACCGGGGCCAGAAGTGTCTCAATG
FMO05543.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5823-RB | 1789 | CG5823-RB | 542..1388 | 8..853 | 4210 | 99.9 | Plus |
| CG5823-RA | 1850 | CG5823-RA | 603..1449 | 8..853 | 4210 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17532726..17533200 | 853..380 | 2325 | 99.8 | Minus |
| 3R | 32079331 | 3R | 17533623..17533924 | 309..8 | 1510 | 100 | Minus |
| 3R | 32079331 | 3R | 17533260..17533334 | 380..306 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:25 has no hits.
FMO05543.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:58 Download gff for
FMO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1452 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:30 Download gff for
FMO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 585..1440 | 1..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:23 Download gff for
FMO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5823-RA | 597..1452 | 1..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:23 Download gff for
FMO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17532723..17533199 | 381..859 | 99 | <- | Minus |
| 3R | 17533260..17533330 | 310..380 | 100 | <- | Minus |
| 3R | 17533623..17533927 | 1..309 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:58 Download gff for
FMO05543.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13358445..13358921 | 381..859 | 99 | <- | Minus |
| arm_3R | 13358982..13359052 | 310..380 | 100 | <- | Minus |
| arm_3R | 13359345..13359649 | 1..309 | 98 | | Minus |
