FMO05545.5prime Sequence
1223 bp (1002 high quality bases) assembled on 2008-08-25
> FMO05545.5prime
CAGTCGACATGATGTCGGAATACTGGATTATCTCGGCCCCTGGCGACAAG
ACCTGCCAGCAGACGTACGACACGATGAACAATCTGACCAGCAAGCAACA
CAACCTGTGCAATAACTACAAGTTCCATATTCCAGATCTTAAGGTGGGCA
CCCTCGACCAACTGGTGGGCCTCTCCGACGATCTGGGCAAACTGGACACC
TATGTGGAGCAGATCACCCGCAAGGTGGCCAACTATCTGGGCGAGGTGCT
CGAGGATCAGCGGGACAAGCTGCACGAGAACCTGATGGCCAACAACACCG
AACTACCCCAGTACTTGACCCGCTTCCAATGGGACATGGCCAAGTATCCG
ATCAAGCAGTCGCTGCGCAACATCGCCGACATTATCTCCAAGCAGATCGG
TCAGATCGATGGCGATTTGAAGACCAAGTCGCAGGCCTATAACAACCTCA
AGGGAAATCTGCAGAATCTGGAAAAGAAGAAGACTGGCAGTCTGCTGACC
AGGAATCTGGCTGATTTGGTCAAGAAGGAGCACTTCATCCTGGACTCGGA
GTACCTGACCACCCTGCTGGTCATTGTACCCAAGGTCATGGCTAATGACT
GGCTGACCAACTACGAGAAGATCACCGACATGATCGTGCCCCGCTCGTCG
CAGCTCATCCAGGAGGACGCCGACTACTGCCTGTTCAACGTGACGCTCTT
CAAGAAGGTTGCCGAGGAGTTTAAGCTGCATGCCCGCGAGCGCAAGTTCA
TTGTGCGCGACTTTGTGTACAACGAGGAGGAGCTGGCTGCCGGCAAGAAC
GAGATGACCAAGCTGATGACGGACAAGAAGAAGCAGTTTGGTCCTTTGGT
TCGTTGGCTGAAGGTGAACTTCAGCGAGGCCTTCTGCGCCCTCATCCACG
TCAAGGCGCTGCGCGTGTTTGTAGAATCAGTGCTGAGATACGGACTGCCT
GTTACTTCCAGGCCATCTGATCGAGCCCAACAAGAAGAGCGTGAAGCGTC
TGCGCGATGTGCCTCAACCAGCTGTTGGTCCTTGGATGGCGCCCTCCGTC
GGCGGTGCTGTCAGCATGCTGATAACGTAAACTCCGCTGGCTTTGCAGTT
CGAATCTTTCCCCTATGGTTCGACAAGTCACACTCAATAGTGAACAGGCA
AGGTCCAGGCTTCTTAAACAATGGGTGGCCGAGCCAAATAGGTGTCATAT
CCATGATCCTAATACATGCATAC
FMO05545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vha44-RB | 1431 | CG8048-RB | 212..1342 | 9..1127 | 5175 | 97.9 | Plus |
| Vha44-RA | 1470 | CG8048-RA | 157..1287 | 9..1127 | 5175 | 97.9 | Plus |
| Vha44-RC | 2693 | CG8048-RC | 663..1504 | 298..1127 | 3730 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16326492..16326748 | 840..584 | 1285 | 100 | Minus |
| 2R | 25286936 | 2R | 16326974..16327160 | 484..298 | 935 | 100 | Minus |
| 2R | 25286936 | 2R | 16333034..16333190 | 297..141 | 785 | 100 | Minus |
| 2R | 25286936 | 2R | 16333276..16333412 | 145..9 | 685 | 100 | Minus |
| 2R | 25286936 | 2R | 16326810..16326909 | 584..485 | 500 | 100 | Minus |
| 2R | 25286936 | 2R | 16326333..16326430 | 937..840 | 460 | 98 | Minus |
| 2R | 25286936 | 2R | 16326143..16326275 | 1066..936 | 360 | 94.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:38 has no hits.
FMO05545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:27 Download gff for
FMO05545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha44-RA | 150..1242 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:32 Download gff for
FMO05545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha44-RB | 201..1293 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:58 Download gff for
FMO05545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vha44-RA | 150..1242 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:58 Download gff for
FMO05545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16326811..16326909 | 485..583 | 100 | <- | Minus |
| 2R | 16326974..16327160 | 298..484 | 100 | <- | Minus |
| 2R | 16333034..16333187 | 144..297 | 100 | <- | Minus |
| 2R | 16333278..16333419 | 1..143 | 97 | | Minus |
| 2R | 16326133..16326273 | 938..1078 | 92 | <- | Minus |
| 2R | 16326333..16326430 | 840..937 | 97 | <- | Minus |
| 2R | 16326493..16326748 | 584..839 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:27 Download gff for
FMO05545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12213638..12213778 | 938..1078 | 92 | <- | Minus |
| arm_2R | 12213838..12213935 | 840..937 | 97 | <- | Minus |
| arm_2R | 12213998..12214253 | 584..839 | 100 | <- | Minus |
| arm_2R | 12214316..12214414 | 485..583 | 100 | <- | Minus |
| arm_2R | 12214479..12214665 | 298..484 | 100 | <- | Minus |
| arm_2R | 12220539..12220692 | 144..297 | 100 | <- | Minus |
| arm_2R | 12220783..12220924 | 1..143 | 97 | | Minus |
