FMO05546.5prime Sequence
1225 bp (993 high quality bases) assembled on 2008-08-25
> FMO05546.5prime
CAGTCGACATGACGGGAATAATTTCGATCGTAACGAGACGGCTGCCCCAA
ACTTTGGGAATGCGAGCCCTGCGGAGTAATGAGGTAAAGCGCTGCATCCG
CCAATATTCTCGGTTAGTTGCCTGCGCCGCCCAGCAGCAGCAACTGCTTC
GCCAGGATGGCTCGAATCGCTGCCAGGAGGCCACCAGGCTTCTCACCTGG
CAGGGAATCCACACCACGTCGAGCTTGTGGTCGGAGCAGACCGTCAATGT
GCCACCCTTTGCGGACTCCATTGCCGAGGGTGACATCAAGTTTACTTGCA
AGGTGGGTGACTCATTCGCCGCTGACGAGGCTGTCATGGAAATCGAGACC
GACAAGACGACGGTGGCTGTGCCAGCTCCCTTCTCCGGAACTCTGACCGA
CATTCTGGTGAAGGATGGCGACACCGTCAAGCCCGGCCAGGCTCTGTTCA
AGATTAAGCCCGGTGCAGCGCCCGCCAAGGCAGCTGCTCCAGCGGCTGCT
CCTGCGCCTGCTGCCCCAAAAGCAGCACCAGCTCCAGCTGCTGCACCCAA
GCCGGCACCTCCACCACCTGCGGCCGGCGCACCAAAGCCACCACCACCGC
CACCACCAAAGGCAGCCCCTCGACCACCGCCACCTGCTCCAGTGGCTGCA
CTCAAACCGGCCGTCGCCCAGGTGAAGGTGCCACCAGCGGACGGATCGCG
GCAGATCCTAGGCACTAGGTCCGAGCAGCGTGTCAAGATGAACCGCATGC
GTCTAAAGATTGCCGCCCGCTTGAAGGATGCCCAGAACACATGTGCCATG
CTCACCACTTTCAACGAGGTTGATATGAGCTATGCCATGGACTTCCGAAA
GCAGATCTGGATGCGTTCACTAAGAAGTATGTAATAAGTTTGGATTCATG
TCGATCTTCGGCAAGGCTAGTGCTATGCGCTGCAGATCAGCCCGTAGTGA
ACGCCGTCAACGATGCACGACATCGTGTATCGCGACTACGTTGACATCTC
TGTGGCCGTGCTACGCCCCGGTGAATGGTGGTACCCGTCATCGGCAACGT
GAGGCATGAACTATTCGACATCGAAATCGCACTGCCGTCTGCGATAGCAG
CGGAATGCCATCACCGTGAAGAACTGACGGTGCCACTTTCCTCTGCCATG
GCGGAGGTTCGGATCCGTAGGACGCCCATATCATCTCCAAAGTCCTTTCC
GGCATGACGCGCATCTTTGACGCGG
FMO05546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5214-RA | 1817 | CG5214-RA | 141..1322 | 9..1166 | 5055 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11245121..11245660 | 290..829 | 2670 | 99.6 | Plus |
| 3R | 32079331 | 3R | 11244785..11244891 | 82..188 | 535 | 100 | Plus |
| 3R | 32079331 | 3R | 11244943..11245048 | 186..291 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 11245737..11245878 | 828..965 | 465 | 95.1 | Plus |
| 3R | 32079331 | 3R | 11244442..11244521 | 9..88 | 400 | 100 | Plus |
| 3R | 32079331 | 3R | 11246083..11246207 | 964..1084 | 340 | 90.4 | Plus |
Blast to na_te.dros performed 2014-11-28 19:00:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2597..2658 | 486..547 | 112 | 64.5 | Plus |
FMO05546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:23 Download gff for
FMO05546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 136..1288 | 1..1136 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:17 Download gff for
FMO05546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 154..1306 | 1..1136 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:24 Download gff for
FMO05546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5214-RA | 136..1288 | 1..1136 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:24 Download gff for
FMO05546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11244787..11244890 | 84..187 | 100 | -> | Plus |
| 3R | 11244945..11245046 | 188..289 | 100 | -> | Plus |
| 3R | 11244437..11244516 | 1..83 | 96 | -> | Plus |
| 3R | 11245121..11245660 | 290..829 | 99 | -> | Plus |
| 3R | 11245739..11245883 | 830..968 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:23 Download gff for
FMO05546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7070159..7070238 | 1..83 | 96 | -> | Plus |
| arm_3R | 7070509..7070612 | 84..187 | 100 | -> | Plus |
| arm_3R | 7070667..7070768 | 188..289 | 100 | -> | Plus |
| arm_3R | 7070843..7071382 | 290..829 | 99 | -> | Plus |
| arm_3R | 7071461..7071605 | 830..968 | 93 | -> | Plus |
