FMO05547.5prime Sequence
1231 bp (912 high quality bases) assembled on 2008-08-25
> FMO05547.5prime
CAGTCGACATGGGCTGCGCACAGTCTGCCGAGGAGCGAGCCGCAGCCGCC
AGGAGTCGCCTCATCGAGCGCAATCTCAAGGAGGACGGCATACAGGCGGC
AAAGGACATCAAACTCCTGCTGCTGGGTGCCGGTGAGTCGGGCAAGAGCA
CAATAGTCAAACAGATGAAAATCATTCACGAGAGCGGCTTCACTGCTGAG
GACTTTAAACAATATCGACCGGTTGTCTACAGCAACACAATACAATCATT
AGTTGCAATATTGCGCGCGATGCCAACCCTAAGTATTCAGTACAGCAATA
ACGAGCGGGAGAGCGATGCCAAGATGGTGTTCGACGTATGCCAACGCATG
CACGACACCGAGCCCTTCTCGGAGGAGCTGCTGGCCGCCATGAAACGCCT
CTGGCAGGACGCCGGTGTCCAGGAGTGCTTCTCGCGCAGCAACGAATACC
AACTAAACGATTCCGCAAAATATTTCCTGGACGATTTGGATCGGTTAGGC
GCCAAGGATTACCAGCCAACTGAACAAGATATCTTGCGCACTCGCGTCAA
GACCACTGGCATCGTTGAGGTACACTTCTCCTTCAAAAACCTCAACTTTA
AATTGTTTGACGTGGGCGGTCAGCGCTCGGAACGTAAGAAATGGATACAC
TGCTTCGAAGATGTCACGGCGATCATTTTCTGCGTGGCCATGTCCGAGTA
CGATCAAGTCTTGCATGAGGATGAAACCACGAACCGCATGCAAGAGTCGC
TGAAACTGTTTGACTCTATCTGTAACAACAATGGTTCACGGACACCTCGA
TTATTCTATTCCTGAACAAGATGATTTGTTCGAGGAGAAGATTCGCAAGA
GTCCCCTGACGATTTGCTTCCCCGAATACACAAGTGGACAGAGTACGGCG
AGGCGGCTGCTTACATTCAAGCTCAAATTTGAAGCGAAAACTAATCACCT
CAAAAGAAATCTACTGCCCATGACGTGTGCCACAGAAACCAATTACATTC
AGTTTGTATCGATGCCTGTCACCGATGTCATCATAGCAACAGCTTGCGCG
ACTAGGACGACGCAGCTTTCTAGAACCATCGATTGGCGGCCGGGCCCAGG
TACTGGGCCTAATCATAAACCTAGGCTAATCCTAACCAACTAGCTAGGAA
TTCTGCCTGCATAGGCTTGGATCGCAAATTAAAGGCCCTCGGGGCGTCAC
ACGAGCGTCTGTACAAATCTCGAGAGTGGAA
FMO05547.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Galphao-RI | 5457 | CG2204-RI | 391..1439 | 8..1050 | 4840 | 98 | Plus |
| Galphao-RA | 3462 | CG2204-RA | 379..1427 | 8..1050 | 4840 | 98 | Plus |
| Galphao-RC | 2367 | CG2204-RC | 316..1364 | 8..1050 | 4840 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10448198..10448383 | 126..311 | 900 | 98.9 | Plus |
| 2R | 25286936 | 2R | 10448470..10448632 | 310..472 | 815 | 100 | Plus |
| 2R | 25286936 | 2R | 10461096..10461225 | 602..731 | 650 | 100 | Plus |
| 2R | 25286936 | 2R | 10460903..10461031 | 473..601 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 10461289..10461446 | 731..886 | 645 | 96.8 | Plus |
| 2R | 25286936 | 2R | 10445506..10445627 | 8..129 | 610 | 100 | Plus |
| 2R | 25286936 | 2R | 10461521..10461671 | 891..1039 | 410 | 90.8 | Plus |
| 2R | 25286936 | 2R | 10439577..10439633 | 72..128 | 195 | 89.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:52 has no hits.
FMO05547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:59 Download gff for
FMO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphao-RC | 306..1367 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:01 Download gff for
FMO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| G-oalpha47A-RI | 100..1161 | 1..1053 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:49 Download gff for
FMO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphao-RC | 306..1367 | 1..1053 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:49 Download gff for
FMO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10445496..10445624 | 1..126 | 96 | -> | Plus |
| 2R | 10448199..10448383 | 127..311 | 98 | -> | Plus |
| 2R | 10448472..10448632 | 312..472 | 100 | -> | Plus |
| 2R | 10460903..10461031 | 473..601 | 100 | -> | Plus |
| 2R | 10461096..10461225 | 602..731 | 100 | -> | Plus |
| 2R | 10461290..10461443 | 732..883 | 96 | -> | Plus |
| 2R | 10461513..10461671 | 884..1039 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:59 Download gff for
FMO05547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6333001..6333129 | 1..126 | 96 | -> | Plus |
| arm_2R | 6335704..6335888 | 127..311 | 98 | -> | Plus |
| arm_2R | 6335977..6336137 | 312..472 | 100 | -> | Plus |
| arm_2R | 6348408..6348536 | 473..601 | 100 | -> | Plus |
| arm_2R | 6348601..6348730 | 602..731 | 100 | -> | Plus |
| arm_2R | 6348795..6348948 | 732..883 | 96 | -> | Plus |
| arm_2R | 6349018..6349176 | 884..1039 | 93 | == | Plus |
