FMO05548.5prime Sequence
1184 bp (954 high quality bases) assembled on 2008-08-25
> FMO05548.5prime
CAGTCGACATGGCTTCCAACTCAACGAAGAAAAGCAAACCGAGCGGTATG
CGCATATTGTGGATACCGGGCCGAAAGTCCCATTCCAAGGGTCGTTTTAA
TGCCACCAACAAGCATATCTCGTACTCGGGTCCACAGAAAAAGAGCGAAG
TATGGTCCTTGGGCGGCAGCAAGGCTCAGGCCGAGCTGATTGATTTTCCC
TCCACCGATTTGTCTGCCAACTCACCATCATCGTCGCTGAGCATTGTGGC
CACCTGTTCGCTGGTTCAAGGATGCGCAAACAGCGATAGAGCATCCTCTG
AGGACTTGGCCATCGTTTCGGAGACTGCCACACTGCCGACTACGCCTGTG
AGCCCGAACTCACCGATCCCGTATAGTCCTACTTCCGAGACTGCAACCGC
ATCCACGCGAGCCATGACTTCGCCCAGCGTGATCACCACCGTTGTAATAC
AGGACTTGCACAACTTTGTAAGCCCCGAGGATTTGCCGAAGGTGCCAAGT
TTTCCAGCAGCACAGGACACCGATGTGGTGCTAAATAGCTCTGCGGGAAC
CACAGCATCGATAGCAACCGATTCTTCGCCACTGGCTAATCATAAGCCGG
GCTCGTCGCCGCCCGCATCACATTCCCAGCAAACAACGCCACAGAAAAGT
AGATATAAGAACCACAACAACAATCAGGAGGATATCAATTCGATCGAAAC
CATTTCCAGTTTAACCAGGGTTTCAGGAAACGCCACAGACTTCGATTGGA
TCGACGAAATGGTGGGACAGCGAAACACCAACGAACTGATACATGCGATA
AGCGAAAGATGTCCAAAAAGTGGAGGGCCTGGCCGCCGAACCAGTTGGAT
GCCAAATCGTTAGCTATGACATGACAGGCCAATTGAATCGCAGGAGTACG
ATGACAACGATGAGAAGTCGTAAATGCTGTACTACTCACTGATGTGCTGC
GACTGTCTATATCTGCAGCTTTCTAGACATCGGTTGGCGCGCGGCCAGGT
AAGTGTCATATCATATCTAATCATATCATAATCCACTAGCTAGAATCTGT
ATGACATGCTGAATTCTACCAATAAAACGCCGCGCAACGACGTTTCGACA
TCGAATGATCTGAGTCATACTGGACTCATGGATCAACGAGCCTGATCATA
GCCGCCTGGTCACTTGCGAACGTGTGGATTCTTA
FMO05548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9992-RC | 1340 | CG9992-RC | 68..1033 | 9..964 | 4490 | 98.6 | Plus |
| CG9992-RE | 1380 | CG9992-RE | 108..1073 | 9..964 | 4490 | 98.6 | Plus |
| CG9992-RD | 1608 | CG9992-RD | 336..1301 | 9..964 | 4490 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16382906..16383167 | 458..197 | 1310 | 100 | Minus |
| X | 23542271 | X | 16382624..16382844 | 678..458 | 1105 | 100 | Minus |
| X | 23542271 | X | 16383324..16383511 | 196..9 | 940 | 100 | Minus |
| X | 23542271 | X | 16382270..16382565 | 956..670 | 865 | 93.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:58:46 has no hits.
FMO05548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:48:43 Download gff for
FMO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 332..1301 | 4..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:20 Download gff for
FMO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RE | 108..1073 | 9..964 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:38 Download gff for
FMO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9992-RD | 332..1301 | 4..964 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:38 Download gff for
FMO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16382906..16383167 | 197..458 | 100 | <- | Minus |
| X | 16383324..16383515 | 4..196 | 98 | | Minus |
| X | 16382270..16382557 | 678..956 | 95 | <- | Minus |
| X | 16382625..16382843 | 459..677 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:48:43 Download gff for
FMO05548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16276303..16276590 | 678..956 | 95 | <- | Minus |
| arm_X | 16276658..16276876 | 459..677 | 100 | <- | Minus |
| arm_X | 16276939..16277200 | 197..458 | 100 | <- | Minus |
| arm_X | 16277357..16277548 | 4..196 | 98 | | Minus |
