FMO05550.5prime Sequence
1163 bp (848 high quality bases) assembled on 2008-08-25
> FMO05550.5prime
CAGTCGACATGGCCACCGTAAACGTAAACCGCAGTGTGACGGACATCTTC
TATCGCTACAAGATGCCACGTCTGCAGGCAAAGGTCGAGGGCAAAGGAAA
CGGCATTAAGACCGTGCTGGTCAACATGGCGGAAGTGGCTAGGGCCATCG
GACGCCCGGCCACCTATCCAACCAAGTACTTTGGTTGCGAGCTGGGCGCC
CAGACGCTGTTCGATCACAAGAATGAGCGCTTTGTTGTGAATGGATCGCA
TGATGTGAACAAGTTGCAGGATTTGTTGGATGGTTTTATTCGCAAGTTTG
TGTTATGCCCCGAGTGCGACAATCCGGAGACCAATTTAACTGTGTCGGCC
AAAAACCAGACCATTTCGCAGTCTTGCAAGGCATGCGGCTTCCATGGTCT
GCTCAAGGTTAACCATAAAGTGAACACATTCATTGTGAAGAACCCCCCGT
CATTGAATCCGGCCGCCCAAGGATCATCGCTAACCGAGGGCAAACGCTCG
AGGAAACAGAAGCAGAAGAACGATAACGCCGATGGCTCCATGACCAATAA
CTCTTTGGCCAACAACTCTGGCGGTGAATCAGATGGCGGCAACGGCACAA
ATCAGGCTAGCCAAACTGAGGCCGAGATTAGCGCAGCTATTCCGGAGAAA
ACAGCCAAGGATGACGACGATGAGGGATGGAGTGTCGATGTTTCGAAGGA
GGCTATTCGTGCTCGTTTGCAAGATCTGACTGATGGTGCTAAGGTATGAC
TATTTCGGATGACTATGATAAACTGAAAAGGAGCGCATTGATATTTTCTA
CGAGTTGGTTAAGGACAACGGGACAGAAGCATTGGATGATGTGCAACTCA
CAAGAGCTGGTGATTGAAGCCAACGCTTGATATTATTAACAGGCTCCATT
GGTCTCGCCGAGCTGCTTTCACTGAAACATCATCAGGACGTGCGAGATCG
CCCTTGCTCTCGCTCACCCTCATATCAAGCACAGCGCTATTATGGTGAAT
GAGCACTGTAAGCTGCATAGTAATGATGACCAGTTGCTGATCTCATGTTT
GACGACTACTCGTGAGGCGTCTACTGAATGACAGAGTTACAACACTGTCT
CGAAAATGTGCAATCCGGAAGCTGCATCGTCGGTGAATGCGAAGTTCTCG
ATTGACGAAGACC
FMO05550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF5-RF | 2383 | CG9177-RF | 870..1877 | 9..990 | 4410 | 97.4 | Plus |
| eIF5-RG | 2521 | CG9177-RG | 1008..2015 | 9..990 | 4410 | 97.4 | Plus |
| eIF5-RB | 2588 | CG9177-RB | 1075..2082 | 9..990 | 4410 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15988067..15988546 | 699..220 | 2400 | 100 | Minus |
| X | 23542271 | X | 15988617..15988829 | 221..9 | 1065 | 100 | Minus |
| X | 23542271 | X | 15987758..15987991 | 919..697 | 620 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:14 has no hits.
FMO05550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:14 Download gff for
FMO05550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF5-RB | 1067..2092 | 1..997 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:38 Download gff for
FMO05550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF5-RA | 1012..2037 | 1..997 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:02 Download gff for
FMO05550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF5-RB | 1067..2092 | 1..997 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:02 Download gff for
FMO05550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15987662..15987989 | 699..997 | 91 | <- | Minus |
| X | 15988068..15988544 | 222..698 | 100 | <- | Minus |
| X | 15988617..15988835 | 1..221 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:14 Download gff for
FMO05550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15881695..15882022 | 699..997 | 91 | <- | Minus |
| arm_X | 15882101..15882577 | 222..698 | 100 | <- | Minus |
| arm_X | 15882650..15882868 | 1..221 | 98 | | Minus |
