FMO05553.5prime Sequence
1215 bp (1048 high quality bases) assembled on 2008-08-25
> FMO05553.5prime
CAGTCGACATGCGTGACAACACACCGCCACACCGGCCAGATTTCGATGAC
GGCGACGACGAACTCCAGGAGATAATTGAGCTGGAGGAGCAGCCGCTGGA
CGAAGATGACGACGATTTGGAGGAGGTGACGCTGGAGCAACTGGAGGCCC
GGCTTGCAATGGCCGGTGGCGATGATGATGAAGAGGAGGACGAGGAGGAG
CTACGTGACCGTGAGAGAATAGCAGCCATCACGGACGAAGCTACGGTCAC
TTTCAAGAAGCACACCGCTCCTGTTTTCGCCTGCAGTCTGCATCCCAACT
ACAATTGGGCGGTGACGGGCAGCGAGGACGATCGAGCCTTCGTTTGGGAA
ACCTCCACCGGCGATGTCCTCTACGAGATCACGGAGCACAAGGACACCGT
CACGGAAACGCATTTCAGTCACGACGGCGTCTATTTGGCCACCGGTGATC
TAGCCGGCGATCTGTTTGTCTTCAAGGTCAGTGAAAAGCACGACGAACGT
CCGATCCTGACTAAAATCTGGGAGTACTCCATGAGCGACATGTCCTGGCT
CTTCTGGCATCGAGCTGCCCACATCCTGCTGGCGGGTAGTGACAGCGGAG
AGGTCTTCGTTTTCCGCATACCCAGCGGTGAATGCAAAATCCTGCCGGGA
CAATCTTCGCGTTGCGAGTCCGGAGAGCTCAGTGGGGATGGCAAAAAGCT
GTTCACGGCCTACGTGAACGGATCCGTAAAGCTGTGGGATCTCAAGAGCT
GTCAGTGCTCATTGACGTAAACGAATCGCATCCAATGGGTTTCGGCGAGA
TCACGCACGCGGTGGTGGCCTGCGAAAGGGAATCGCCCTTCTACGTCTGC
GCTGAGGCGTCCGGAAAATGCTGTTCTGCACTAACAACGGTCCGGTTAGC
ACATCCAGTCGAACACGGTATGAGTGTCTGGCCTTTGCTCCTCCTCGGCG
GATCTAAGCTCTTTGCTGTGGCTCGCTGACGCAGATATCATCTGGGACTA
TGCCAATCACGTTGCGTACTATGCGAAATCCAGTTCCCATGATGCTGTCA
TAAGATCAATGGTGACGACCACACGATACTGCGGCCACCTCGCAGAATCT
GACGCATTCGACGCCACGCCAGATTCTGATCACCTCTGACGGGACCACAT
CACTTCAGATGTCTCAAGCCTAGAACTTTGTCTACGGCATCCAGACACAC
CGCGCCAAGTATATC
FMO05553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5114-RA | 1440 | CG5114-RA | 101..1233 | 9..1114 | 4990 | 97.4 | Plus |
| CG5114-RB | 1500 | CG5114-RB | 101..957 | 9..864 | 4245 | 99.8 | Plus |
| CG5114-RB | 1500 | CG5114-RB | 1019..1293 | 865..1114 | 765 | 90.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14982935..14983791 | 9..864 | 4220 | 99.8 | Plus |
| 3L | 28110227 | 3L | 14983915..14984034 | 865..978 | 285 | 94.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:14:54 has no hits.
FMO05553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:34 Download gff for
FMO05553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5114-RA | 96..1250 | 1..1129 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:41 Download gff for
FMO05553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5114-RA | 83..1237 | 1..1129 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:05 Download gff for
FMO05553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5114-RA | 96..1250 | 1..1129 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:05 Download gff for
FMO05553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14982930..14983790 | 1..863 | 99 | -> | Plus |
| 3L | 14983913..14984120 | 864..1054 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:34 Download gff for
FMO05553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14976030..14976890 | 1..863 | 99 | -> | Plus |
| arm_3L | 14977013..14977220 | 864..1054 | 91 | -> | Plus |
