FMO05555.5prime Sequence
1231 bp (1004 high quality bases) assembled on 2008-08-25
> FMO05555.5prime
CAGTCGACATGGAGTACCTGAGCTACGTGTACGAAAAAATCTTCGGGGGC
AATCCTCCCACGGATGACACGCAAGGGGCTTTCCACACGCCCCGCAAGGT
CATCTGCTTCGGCAACGTCCTGCTCGACCGACTAGTCCAGCTCGAGGATC
CCCAACTCCTGGAGCGGTTCGGCCTGGAACTGGGCTCCAAGGGTGAACTG
GACATGGAGAAACTCAACCAGCTGGCAGCGGAGGCTTCTGAGAGCTCTCG
GTGCCTTACAAACCCGGGTGGCTCTGCCCTCAACACTGCCCGCATCCTGA
AGCAGCTGGGCACAGACGCGCTCTTCTTTGGCGCCGTGGGAGCCGACAAG
CACGCCGAGGAGCTGCGCCAGATCATTCGGGATCGCGGCATCGAGGCCAG
GCTGCAGACCGTCGAGGATGCGCACACAGGGCAGTGCGTGTGCCTCATGT
ATCAGGACAACCCCACGCTGTACGCCAACATCGGCGCCTCGGCTCAGTTC
GAGGTGCAGACCCTGAGCCACGCCGTCAGCCACGAAGGCCAGAGCTTCCT
GCGACCGGTGGAGCGCAAGCAAATCCTGTACGTGGAGGGCTTCTTTGTGC
CCCAGAGGAGTGATGTGTGCGATTACATAGTGCAGCACCTGGTGCGGGAG
CGGCGACGCCTGGCTCTCAATCTCAGTGCACCCTACATTGTGAGGAAAAA
TCACCAGGCTATGATGAAGCTGGCCCGGGCCGCCTTCTTCCTGTTCGGAA
ACCGACAGGAGTTCGAGGCGCTGGCCGAGGCTGCGGGTGGGTTCCGAAAC
GTCGACGAACTGGCGGATCATCTCCTGCAATCCGGTGGCACAAAGGTCAT
CTTCGTCACCACGGCAGTGCCGGCGTCCAGGTGATCACCAACTACGTGGA
GGAGCTGGCTCCTCCCGGACCCGTAAGCTAGGAGACTTCAAGCGCACGCG
TAAAGCAGCTGGTGATGCCACTGGGGCCGGAATGCTTTTGTGCCGGATTC
TTGCCCGCCTGCTGAGAGCGCTCCGCTGGGCGGTGCATCGAATGCCTCCA
GCGTAGCCGCCAAGTCGTCACCCAGTGGGCCTGCCATCTGCCCGCAGCTT
CTAGAACATCGTTTGGGCGCGGTCAGGTAGGGTCATATCATACCTAATCT
ATCTATCCAACATGCCTTGGAATCTGGTCTGGACTAGGCCTGGAACTCTC
ACCAATATAAGGCCGCCGTCGGCGTCGGCTA
FMO05555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ady43A-RA | 2203 | CG1851-RA | 476..1573 | 9..1093 | 4970 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7243742..7244517 | 1011..243 | 3440 | 98.3 | Minus |
| 2R | 25286936 | 2R | 7244988..7245143 | 244..89 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 7245221..7245301 | 89..9 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:59:39 has no hits.
FMO05555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:22 Download gff for
FMO05555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ady43A-RA | 470..1576 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:44 Download gff for
FMO05555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ady43A-RA | 452..1558 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:14 Download gff for
FMO05555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ady43A-RA | 470..1576 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:14 Download gff for
FMO05555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7243684..7244515 | 245..1064 | 97 | <- | Minus |
| 2R | 7244988..7245143 | 89..244 | 100 | <- | Minus |
| 2R | 7245222..7245307 | 1..88 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:22 Download gff for
FMO05555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3131189..3132020 | 245..1064 | 97 | <- | Minus |
| arm_2R | 3132493..3132648 | 89..244 | 100 | <- | Minus |
| arm_2R | 3132727..3132812 | 1..88 | 95 | | Minus |
