FMO05556.5prime Sequence
642 bp (642 high quality bases) assembled on 2008-08-25
> FMO05556.5prime
AAAACAAAGTTATCAGTCGACATGCTAAATGCCAAGATCGGGAAGGTCGG
CAAGGTACTGGTGTGCGGGATGAAGGGCGTGGGCAAGACGGCGCTGATAG
AGCAGCTGGTCTACGGCCACGTCAATCCCGAAACGGAACTGCATCCAACC
ATTGAGGATATCTACGTGGCCAGCGTGGATACAGGCAGGGGCGGAGCCCG
AGAGACCCTGCGCATCTACGACACGGCCGGATTGCAGGGCGAGCAGCAGC
AGCTGCCACGCCACTACCTTCAGTTTCCAGATGCATTCGTTCTGGTCTAC
GATCCCATGGATCCGCGCAGCCTTGACATGCTGGCCGACATCAAGGCTGA
CATTGAGAAGCACAAGGAGAAGAAGGAGATTCCCGTTGTGGTGCTGGCCA
ACGTGAGGGCACGAGCAGCCCCAAATCCCGTCGAGAAGGTCATGGACCGC
GCCAACATCTGGTGCCAGCGAGAGCGCATAAAGCACTACACGGTGAACGC
CATGGAGCGTCCCTCCCTCTACGAGCCATTCACCACGCTCTGCGCCCGGC
TGCACCCAATGCAGACGAAGAGCACGTTCCCTCAGCTGCGCCAAGTTATG
CAGAACCGGCAGAAGAGCGAGGCTGCAAGCTTTCTAGACCAT
FMO05556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30503-RB | 1842 | CG30503-RB | 98..700 | 22..624 | 3015 | 100 | Plus |
| kappaB-Ras-RB | 1842 | CG1669-RB | 98..700 | 22..624 | 3015 | 100 | Plus |
| kappaB-Ras-RC | 933 | CG1669-RC | 98..700 | 22..624 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7445029..7445518 | 624..135 | 2450 | 100 | Minus |
| 2R | 25286936 | 2R | 7445581..7445695 | 136..22 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:56 has no hits.
FMO05556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:15 Download gff for
FMO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kappaB-Ras-RA | 98..705 | 22..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:45 Download gff for
FMO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kappaB-Ras-RA | 67..674 | 22..631 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:05 Download gff for
FMO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kappaB-Ras-RC | 98..705 | 22..631 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:05 Download gff for
FMO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7445026..7445517 | 136..624 | 99 | <- | Minus |
| 2R | 7445582..7445695 | 22..135 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:15 Download gff for
FMO05556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3333087..3333200 | 22..135 | 100 | | Minus |
| arm_2R | 3332531..3333022 | 136..624 | 99 | <- | Minus |
