FMO05558.5prime Sequence
1229 bp (1058 high quality bases) assembled on 2008-08-25
> FMO05558.5prime
CAGTCGACATGGCTCCTAAGAAGCATAGTGGGTTTATGATGTTCGTAAAC
GAGTGGAGAAACCGGAACGCCGAGGGCCGACGCATGACGCTGGCGCAGGC
TGTTTCCCACTGCGGCACCATATGGGAGAAAATGAACACCCAGCAGCGTG
GTCCGTACAACTCAGGCGGCAAGGACGCAAATGTGGCGCAACGCGCCAAA
AGGGAAAGTTCCAACGGCCACGGCCAGGTGGACAAGGCCCAAAGGGAGGC
CACCGAGAGCTTGATGGACATGAAACGTACCATCGAGCGCCTCGTGCTAA
ACGCCAAGATGTCCCATGATCTGGAGAATGCCAAGTTTGTCTTCGTTGCC
TTCAACTACTTCACTAAAGCCTTGACCACCGACGTCTATGTGCCCGCCGA
GTTTGCGGCATGCGAATATTCGTTGAAGGAGGGAATCCGATCCATCTACA
GCACCATGATTGACCCCGGTCAGATCATTTTTGGGCAAGGTAGCGATGCC
CTGCTTCACTCTTCAACCACTCACGACCTGCCGCTGCCGCCCAACGCGCT
GGGGGAGAAGAACATGACCAAGCTGTACCGCAACATTGTTGACTACTTAT
CCAAATGCCAGGGAAAAGGCAAGACCCTAGTAGTCTTTACACCCGCCGAA
AATATTACCATGGTGAAGTCATGCTTCCGCTATTTGGAGTGCGATGATGA
CTTCAGGGACGGGGGCGAAAAAATCCAGGTGTTTGATATCCAGTACTTGC
TATTCATATTGAAGAAGGAGGTCATGAATGTCGCTGATTTGAATGACGAG
AAAATCAACAAATTCGCGACGGATGCTTTTTTTAAGAAAGACTTTTTCGA
GTTTACCGCAGGGATTGCGTGTCAGTACCACGAGGATAATGATCGAACCA
AGTACTGTACCCAGAGTATGGTGACTAGATGGGCGTATACCTTCACTGAT
TTTATGTGCGGAGACCTGCCATAACCGTCCAACCCGGAAAGCACATACCT
GCCCAAACAAACCCACTACTTATCATAGGCTCGTACGCCCTCCTCACTCG
ACACGAGTCTTCTTCGACTTTTTTTTTTTCGCTTCCCGATTCTGGGGTCA
AGAGGAAGCACCCGGAGCTTGTCGCTTTCTAGACAGTCGACTTCCGTGCA
TCAGTTTCTCAGCCCTTAGACACACCTTCTTTGCGCAAAATTAAACCGAA
GAGTCCTCGTATATTCTCCGACGACCGCC
FMO05558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mael-RD | 2143 | CG11254-RD | 647..1849 | 9..1196 | 5320 | 97.2 | Plus |
| mael-RB | 1830 | CG11254-RB | 334..1536 | 9..1196 | 5320 | 97.2 | Plus |
| mael-RA | 1759 | CG11254-RA | 263..1465 | 9..1196 | 5320 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22724985..22725542 | 318..875 | 2790 | 100 | Plus |
| 3L | 28110227 | 3L | 22724738..22724929 | 127..318 | 960 | 100 | Plus |
| 3L | 28110227 | 3L | 22725602..22725836 | 873..1103 | 720 | 91.9 | Plus |
| 3L | 28110227 | 3L | 22724566..22724685 | 9..128 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:04:41 has no hits.
FMO05558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:15 Download gff for
FMO05558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 255..1384 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:34 Download gff for
FMO05558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RB | 325..1454 | 1..1122 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:52 Download gff for
FMO05558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mael-RA | 255..1384 | 1..1122 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:52 Download gff for
FMO05558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22725605..22725859 | 876..1122 | 92 | | Plus |
| 3L | 22724558..22724685 | 1..128 | 96 | -> | Plus |
| 3L | 22724740..22724929 | 129..318 | 100 | -> | Plus |
| 3L | 22724986..22725542 | 319..875 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:15 Download gff for
FMO05558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22717658..22717785 | 1..128 | 96 | -> | Plus |
| arm_3L | 22717840..22718029 | 129..318 | 100 | -> | Plus |
| arm_3L | 22718086..22718642 | 319..875 | 100 | -> | Plus |
| arm_3L | 22718705..22718959 | 876..1122 | 92 | | Plus |
