FMO05559.5prime Sequence
1198 bp (1016 high quality bases) assembled on 2008-08-25
> FMO05559.5prime
CAGTCGACATGCGCCCTCGATTTGTATGCCATCAGCAGCACTCGGTGGCC
CATTCCCACTACCAGCCCCACTCCCACTTCCATCACCATACCCACCGCCA
TCCCAATCCGCCCCATCACCATCACATTTACGGCGCCACTGACGTCAGTT
ATCGGCGTTATCGCACCGCTGGCATGGTGGTGGCCGAGGGAGTTATGGAC
TCCGGGTCGGGATCGGGCACGGGAACGGGCTTGGGGCACTTCAACGAGAC
CCCATTATCCGCACTGGGCATCGAGACCCGCACCCAGCTGTCCCGCATGC
TGAACCGCAAGAAGGTGCTGCGATCCGAGGAGGGCTACCAGCGGGACTGG
CGCGGCATCTCGGAGCTGGCCAAGCAGAAGGGATTCGTCGACGAGAACGC
CAACAATCCCATGGATCTGGTGCTGATCAGCTGGAGCCAGCGGAGTCCCC
AGACCGCCAAGGTGGGCCATCTGGAACACTTCCTGGGCATTATCGATCGG
TGGGACGTCTGCGACGATATCCAGGAGAATCTGGCCAAGGACACCCAGCG
CTTCATCATGAAACAGGAGCAGCGACAGACTGCTCTCGTGGAGGCGTGTC
CGCCGCCCCCCAGCGACTGCTTCGAGACCAACAACAACTACAGCAGCAGC
AACAACATCACAGTGGGCCAAAGTGTGCAGATCCTCAGCGACGAGGACCA
GAGATGTGTACAGATGGGCCAACCGCTGCCCAGATACAACGCATGTGTTC
TGTACGCGGAGGCAGACATCGATCATGCCACCGAGATCATGAATAATCTA
GAGTCTGAGCGATACAATCTCATGCTATTCCTGCGCCACCGCGACATGCT
AATGGGCGTTCCGTTCGAGCATGTCCAGCTATCCCATTTCATGGCCACCC
GCTGCAATCACCTGATCGTCGTGCTCACAGAGGAGTTTCTTCGGAGTCCG
GAGAACCACGTACCTCGTGACTTCATCCAAAGATCAGATTGAGATCACAC
TCGCAGATCATACCGATTCTGTACAATCGTCATGCAATAACCCAGACCCT
GGCATTTACCGCAATCAGTAACGCGGGGACCTCAGTGTCACTCTGGACAG
TGCCGTCCTAACGATCTGATGCTTCGATCACTCAGCGCCAGTCATCTGCG
GGAGATCGCTCCGGTACCTCCGCATCGATCCAATACCACGCAGAGGAG
FMO05559.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myd88-RC | 2424 | CG2078-RC | 595..1653 | 9..1059 | 4975 | 98.6 | Plus |
| Myd88-RB | 3613 | CG2078-RB | 929..1987 | 9..1059 | 4975 | 98.6 | Plus |
| Myd88-RA | 2758 | CG2078-RA | 929..1987 | 9..1059 | 4975 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9307269..9307794 | 534..9 | 2630 | 100 | Minus |
| 2R | 25286936 | 2R | 9305469..9305757 | 822..534 | 1445 | 100 | Minus |
| 2R | 25286936 | 2R | 9305258..9305403 | 970..824 | 685 | 99.3 | Minus |
Blast to na_te.dros performed 2014-11-28 19:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6932 | 546..669 | 141 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6817 | 607..701 | 137 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2391..2428 | 623..660 | 136 | 84.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2613..2653 | 620..660 | 133 | 80.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6746..6795 | 611..660 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6816 | 611..660 | 133 | 74 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1524..1576 | 611..660 | 132 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6753 | 625..660 | 126 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6849 | 611..660 | 126 | 76 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..2911 | 562..660 | 125 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2352..2401 | 611..660 | 124 | 72 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2445..2476 | 629..660 | 124 | 87.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1522..1556 | 627..661 | 121 | 82.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..2522 | 611..661 | 120 | 70.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1122..1154 | 627..659 | 120 | 84.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6815..6868 | 611..661 | 119 | 72.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2778..2824 | 614..660 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6787..6902 | 541..662 | 118 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2317..2350 | 627..660 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2464..2497 | 627..660 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..6759 | 627..660 | 116 | 82.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2374 | 611..660 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2413 | 611..660 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2406..2455 | 611..660 | 115 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6828 | 611..660 | 115 | 70 | Plus |
| Dtei\I-element | 5386 | Dtei\I-element DTEII 5386bp | 1181..1228 | 614..661 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2793..2838 | 611..656 | 113 | 71.7 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 543..579 | 629..665 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2677 | 611..672 | 112 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5633..5692 | 613..672 | 111 | 65 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1017 | 627..668 | 110 | 75.6 | Plus |
FMO05559.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:07 Download gff for
FMO05559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 920..2004 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:35 Download gff for
FMO05559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 874..1958 | 1..1074 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:23 Download gff for
FMO05559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myd88-RA | 920..2004 | 1..1074 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:23 Download gff for
FMO05559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9305124..9305158 | 992..1026 | 94 | <- | Minus |
| 2R | 9305234..9305402 | 825..991 | 97 | <- | Minus |
| 2R | 9305467..9305756 | 535..824 | 99 | <- | Minus |
| 2R | 9307269..9307801 | 1..534 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:07 Download gff for
FMO05559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5192629..5192663 | 992..1026 | 94 | <- | Minus |
| arm_2R | 5192739..5192907 | 825..991 | 97 | <- | Minus |
| arm_2R | 5192972..5193261 | 535..824 | 99 | <- | Minus |
| arm_2R | 5194774..5195306 | 1..534 | 99 | | Minus |
