FMO05560.5prime Sequence
554 bp (554 high quality bases) assembled on 2008-08-25
> FMO05560.5prime
ATAAAAAAAAGTTATCAGTCGACATGTCGATCGCCAGTGTTCACGGTCCC
CAAATCGCCGACATCTGCAGTCCCCTGTCGCATCACAATCTCGGTCTGTC
TGCCTCGCTGCCAGATCTGGTGGGCAGTCCCCTGGAGATCAGCATGGACA
ACGTGCTGACCATTGAGGAGCTGCGCCAGCACATGGGCTCCTGCTTCACC
TGCGGCGTCTCCTGGACGGACGACCATGTGTCCCTCGACTGCAGCGAATG
CGGTGGCTACAGCCTGGAGCGTCCCTGTCCCCTGTGCGACGGCCAGTGCG
GTGTCCAATGGAAACGTGATTTCGCCATGTCCCATGCCTGCAGTCAAGCT
CGCTGGGTGGGCGTGTGCATCAGCTACCCGGAAGTCGTGGCCGGAGTCCA
GTTGCCCGTGGGAGCAGGCGCTGGAGCCGCCACCTCGTGTGCCGCTGCCG
CTGCGAATCAACTGCGCCTGGCCCAGGAGCTGTGCTCCCGCCTGGAACAG
CTGTCCACGTCGACGGCGAGCAAAAGCGGTCGCATCGCAAGCTTTCTAGA
CCAT
FMO05560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pino-RC | 2130 | CG4710-RC | 535..1047 | 24..536 | 2565 | 100 | Plus |
| Pino-RA | 2079 | CG4710-RA | 484..996 | 24..536 | 2565 | 100 | Plus |
| Pino-RB | 1980 | CG4710-RB | 385..897 | 24..536 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1116441..1116690 | 329..80 | 1250 | 100 | Minus |
| 2L | 23513712 | 2L | 1115737..1115944 | 536..329 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 1117443..1117499 | 80..24 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:59:20 has no hits.
FMO05560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:08 Download gff for
FMO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 377..903 | 16..542 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:59 Download gff for
FMO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| smi21F-RA | 584..1110 | 16..542 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:00 Download gff for
FMO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pino-RB | 377..903 | 16..542 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:00 Download gff for
FMO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1115731..1115943 | 330..542 | 98 | <- | Minus |
| 2L | 1116441..1116690 | 80..329 | 100 | <- | Minus |
| 2L | 1117444..1117507 | 15..79 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:08 Download gff for
FMO05560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1115731..1115943 | 330..542 | 98 | <- | Minus |
| arm_2L | 1116441..1116690 | 80..329 | 100 | <- | Minus |
| arm_2L | 1117444..1117507 | 15..79 | 93 | <- | Minus |
