FMO05563.5prime Sequence
593 bp (593 high quality bases) assembled on 2008-08-25
> FMO05563.5prime
CAGTCGACATGACGGAATACAAACTGGTCGTCGTTGGAGCCGGAGGCGTG
GGCAAGTCCGCGCTCACCATCCAGCTAATCCAGAACCATTTCGTGGACGA
GTACGACCCCACAATCGAGGACTCTTACCGAAAGCAAGTGGTTATCGATG
GAGAGACCTGCCTGCTGGACATCCTGGACACCGCCGGCCAAGAGGAGTAC
TCGGCCATGCGGGATCAGTATATGCGGACTGGCGAGGGATTCCTGCTGGT
CTTTGCCGTCAACAGTGCGAAGTCCTTCGAGGATATCGGCACCTACCGTG
AGCAGATCAAGCGCGTAAAGGATGCCGAAGAGGTGCCCATGGTGCTGGTG
GGCAACAAATGTGATCTGGCCTCGTGGAACGTTAACAACGAGCAGGCAAG
AGAGGTGGCCAAACAGTACGGCATTCCATACATTGAGACATCCGCCAAGA
CGCGCATGGGCGTGGACGATGCATTTTACACACTGGTGCGCGAAATCCGC
AAGGACAAGGACAACAAGGGGCGGAGGGGCCGCAAAATGAACAAGCCGAA
TCGTAGATTTAAATGTAAAATGCTCGCAAGCTTTCTAGACCAT
FMO05563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ras85D-RA | 1958 | CG9375-RA | 442..1008 | 9..575 | 2835 | 100 | Plus |
| R-RC | 2702 | CG1956-RC | 615..849 | 18..252 | 320 | 76.3 | Plus |
| R-RB | 2872 | CG1956-RB | 785..1019 | 18..252 | 320 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9511737..9511997 | 407..147 | 1305 | 100 | Minus |
| 3R | 32079331 | 3R | 9511511..9511683 | 575..403 | 865 | 100 | Minus |
| 3R | 32079331 | 3R | 9512153..9512291 | 147..9 | 695 | 100 | Minus |
| 3L | 28110227 | 3L | 1860968..1861202 | 252..18 | 320 | 75.7 | Minus |
| 3L | 28110227 | 3L | 4140054..4140142 | 175..263 | 205 | 82 | Plus |
| 2R | 25286936 | 2R | 16109166..16109231 | 226..161 | 195 | 86.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:15:13 has no hits.
FMO05563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:15:28 Download gff for
FMO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras85D-RA | 435..1011 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:54 Download gff for
FMO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras85D-RA | 432..1008 | 1..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:04:37 Download gff for
FMO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ras85D-RA | 435..1011 | 1..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:04:37 Download gff for
FMO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9511507..9511681 | 405..579 | 98 | <- | Minus |
| 3R | 9511740..9511996 | 148..404 | 100 | <- | Minus |
| 3R | 9512153..9512298 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:15:28 Download gff for
FMO05563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5337229..5337403 | 405..579 | 98 | <- | Minus |
| arm_3R | 5337462..5337718 | 148..404 | 100 | <- | Minus |
| arm_3R | 5337875..5338020 | 1..147 | 97 | | Minus |
