FMO05567.5prime Sequence
1185 bp (1032 high quality bases) assembled on 2008-08-25
> FMO05567.5prime
CAGTCGACATGAACCAGAAACATTCCGAACCATTCTACATATCGCCCCGG
CTGTTCGACAACCGTCGTCTCAAGCGGCGCCGCTGTCGGTGGATGGAACG
CCTGCTTGAGCACCAGCGGATCTGCATGGCCCGGATGCGCGACCAAGTGG
CTCTCGCCTCCAAGACTGACCGGCAGCTGTCCCATCTGCAGCGGCGCCAT
GTCGCCTCCACTTTGCAGCCGGACGTGACCATCGACCTGCTGTCGGATGA
CGATGAGACCCCATCGGCCGGACAGCCCGCTGCAGCTGGCCACAATCGCC
TCCTGATTCCTGCCCCAGGGCACCGAGCACATAGAACGGGCAGAAGGCAG
GCGCCGCGCAGAGCTGCCACCCACTCATACCCAGTGACCGACAGCATCCT
GATAACCAGCGATGACGAGCACAACGAGCAGGAACCCAGCAGCACGGCAA
GAGTGCGCTCCCAGCTCTCCATGCGCTCACCGCCACCGCTCGCACCGCTC
ACACAGTCGGAGACCATCGAAGAGGTAACTGTTTCGTTGGTGCCGCGCAC
CTCCACCACTGCCAACTGCCTGACGCGGGTGTCAGGTCACCCCAAGCCGT
GTCGAGCGTCGACGGCGGCCAGCAATGGATTCGCCACCGCCGAAGGCGGA
GAGGGCGGCAATGAAACGGGCTGTTTTCTGGAGGTGGACGTGGGCGGAGG
CATCACAGCCACGCTGCCGGACGAGACGACCGTTCACACGGTCATCGCAA
ACCGTATTTACGAACTCTCGCTGAGCAAACTACGCGAAGGCCTGGCTTTT
AGTGGAGTGCCGGAATACACGAACGACCTGATGCCGGAGCAGCTGCAGAA
ACTGTCACCGGCATTGCGCGCCAAAGTGGCGCCCTTGGTGGCTCCCTCGC
CGCCCACGCCCATCTCCCTAAACTGTCCAGCGACCTCAGCATATCACTGA
TCTAGACGAGACGATTGCGAAAGCAACGGTCACATGTCACGAGGAGTCGC
ACGAACGTGCACCCCGTCTGGTGCTGCGCGAAGTCACGCTGCGCAGCTGC
TCAGCACACAGCAAGCTTCGTGGTGCAGCATCTGCATACGTCGCGGCGAC
TCGAGTCCATGGCCTTGCCCTTCGATGCCAATTCGAACTCGTCGATCGTG
TGCCTGGCCGTGGTTGCCGGGCACGAAACTGTGAG
FMO05567.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| a6-RC | 2047 | CG3771-RC | 348..1499 | 4..1123 | 4945 | 97 | Plus |
| a6-RA | 2210 | CG3771-RA | 348..1499 | 4..1123 | 4945 | 97 | Plus |
| a6-RB | 2218 | CG3771-RB | 358..1507 | 6..1123 | 4935 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1694497..1695475 | 981..6 | 4730 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:26 has no hits.
FMO05567.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:21 Download gff for
FMO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1322 | 1..975 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:57 Download gff for
FMO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1322 | 1..975 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:07 Download gff for
FMO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| a6-RA | 345..1322 | 1..975 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:07 Download gff for
FMO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1694503..1695478 | 1..975 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:21 Download gff for
FMO05567.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1588536..1589511 | 1..975 | 99 | | Minus |
