FMO05568.5prime Sequence
1212 bp (1062 high quality bases) assembled on 2008-08-25
> FMO05568.5prime
CAGTCGACATGTTTTCCAGCGGCCCCAATTACAACAAACTGAAGACCAAT
CTTCGATTGGCTCTCAATCGCCTGAAATTGCTGGAGAAGAAGAAGGCGGA
GCTGACGCAAAAGTCCAGGAAGGAAATAGCCGACTATTTGGCCACGGGCA
AAACGGAAAGGGCGAGGATTCGCGTGGAGCACATCATTAGGGAGGACTAC
TTGGTGGAGGCAATGGAAATGGTGGAGATGTACTGCGACCTGTTGCTCGC
CAGATTCGGCCTCATCACCCAGATGAAGGAGCTGGACACAGGGATCGCTG
AGCCGGTGGCCAGCTTGGTTTGGGTGTGTCCCCGCCTACAGAGCGATATA
GCCGAGCTGAAGATCATATCGGACATATTTGTGACCAAATACGGTCCACA
GTTCGCCGAGCAATCGAGAACCGCCACTGGCGAGCACTATGTGTCCGAGA
AACTCATGCACAAGCTGACGCTGCAGGCACCACCCAAGCTTTTGGTGGAG
AATTACCTCATTGCCATTGCCAAGAACTACAACATCGAATACGAACCGGA
TCCGCAGGTTATGCAGGAGGATCAGCCACAGCAGCCGCATCTGATTGACC
TCTCCGATCGGAACAACTTGAGCGGAGGCGGAGGTGCTGGCGGCGGTGGT
GCTGCGCCGCCACAAATGGGCTTCATTGGCTATCCGGCTATGCCAGCACT
GCCCGACATGCCGATGCCACCGAGCGCAAAGCCCTTCAATTACCCACCCT
TCGGTGGAGGTGGTGGCGGCGGAGGAGGTGGAGCTCCAGCTGGTGCATAT
GCTCTACCCCATCCCGTGCAGCACCGCCGCCGTTTGCCTACAATATACCG
CCCAATCAGCCGCCAACGCATGCAGTCCTGCCTGCCAAATGTGCCGAGGA
GAGGATCTGAACACCAACTTTATCGATCGTGAAGCGAACACACGATGGCT
CGGGCAGCCCGGATGAGATATTTTGCGCCCAAACCCGAATGATCCGCCGC
CGCGTTACACCTCATATCCTGTAATCTCCAGAATGCCACAACGAAACCCA
CCCGATCAGCTGCCACCGGGTATCCCGCTACCAGTGCTCCCCGGCAATGA
ATTCCCCTCGCTGCCACGGTCCAACGATCTGCAGATCCGGGCAGGTTCCG
AAGAGAACGCAAGATAGATGATTCGAGAGACTGTACCGTGGCTCTCCGAG
ACACTTAGTAGA
FMO05568.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10103-RA | 1605 | CG10103-RA | 94..1246 | 9..1132 | 5065 | 97.2 | Plus |
| CG10103-RE | 1506 | CG10103-RE | 94..1066 | 9..976 | 4740 | 99.5 | Plus |
| CG10103-RF | 1189 | CG10103-RF | 94..1065 | 9..975 | 4735 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6755420..6756161 | 927..188 | 3610 | 99.7 | Minus |
| 3L | 28110227 | 3L | 6756222..6756404 | 191..9 | 915 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:44 has no hits.
FMO05568.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:09 Download gff for
FMO05568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 86..1260 | 1..1142 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:59 Download gff for
FMO05568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 108..1282 | 1..1142 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:29 Download gff for
FMO05568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10103-RA | 86..1260 | 1..1142 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:29 Download gff for
FMO05568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6754767..6754807 | 976..1013 | 92 | <- | Minus |
| 3L | 6755073..6755123 | 928..975 | 94 | <- | Minus |
| 3L | 6755420..6756158 | 191..927 | 99 | <- | Minus |
| 3L | 6756223..6756411 | 1..190 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:09 Download gff for
FMO05568.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6747867..6747907 | 976..1013 | 92 | <- | Minus |
| arm_3L | 6748173..6748223 | 928..975 | 94 | <- | Minus |
| arm_3L | 6748520..6749258 | 191..927 | 99 | <- | Minus |
| arm_3L | 6749323..6749511 | 1..190 | 97 | | Minus |
