FMO05570.5prime Sequence
1257 bp (1046 high quality bases) assembled on 2008-08-25
> FMO05570.5prime
ATAATACGAAGTTATCAGTCGACATGTTTCTAATAGCCATTGCCATTATT
TTGGCCACCATTTTGGTGTTCAAGGGAGTGAGGATATTCAACTACATAGA
CCACATGGCTGGCATCATGGAGATGATCCCAGGACCCACGCCATACCCCT
TCGTGGGTAATCTGTTCCAGTTCGGTCTCAAGCCAGCCGAATACCCCAAA
AAGGTCCTGCAATATTGTCGGAAATATGACTTCCAGGGATTCCGCTCCCT
GGTCTTCCTGCAGTACCACATGATGCTGAGTGATCCGGCTGAAATTCAGA
ACATCCTGTCGAGCTCATCGCTGCTGTACAAGGAGCACTTGTACTCCTTT
CTGAGGCCCTGGCTGGGCGATGGCCTCCTCACCAGTTCCGGTGCCCGCTG
GCTAAAGCACCAGAAGCTCTACGCCCCTGCCTTCGAGCGCTCGGCCATCG
AGGGTTACCTGCGAGTGGTCCACCGGACGGGCGGACAGTTCGTCCAGAAA
CTCGACGTACTGTCGGATACACAGGAAGTCTTCGATGCCCAGGAGCTGGT
GGCTAAGTGTACCCTGGATATTGTGTGTGAAAACGCCACTGGGCAGGACA
GCAGCTCACTGAATGGAGAGACTTCGGATTTGCATGGAGCCATCAAGGAC
TTATGCGATGTGGTCCAGGAGCGCACCTTCAGCATCGTGAAGCGTTTCGA
CGCCCTCTTCCGCCTCACCTCCTACTACATGAAGCAGCGCCGCGCTCTGT
CGCTCCTGCGCAGCGAACTGAATCGGATTATCTCGCAACGGCGACACCAG
TTGGCTGCGGAAAACACGTGCCAGCAGGGCCAGCCAATCAACAAACCCTT
CCTGGACGTCCTGCTGACCGCCAAGCTCGATGGGAAAGTCCTCAAGGAGC
GCGAGATTATCGAGGAGTGTCAACATTTATATTTACAGGTCACGATCCCA
TTGCCGCCGCATATCTTTCACGCTGTACACCCTTTCCCGTCACTCGGAGA
TTCAGCAAAAGCTGCGAGAACAGCGACGCATCTTTGGCGAGAACTTCGCG
GGGAGCGGACTGGCTCGGCTGAACGATGCATTATCTAAAAGTTGAATTAT
AAGGAGACCTGCCTTGTACCCTTTTGTCCACTTTATTGCCGACACGCATT
CCATCGATATCAATGACCAAGGTCCAAGGACACAGGATCTGTGCCCTATG
GCAATGGCTACACAGAAAGATTCCTCGCACGAATACATGATGACAAATTT
GCGCACG
FMO05570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4ad1-RA | 1698 | CG2110-RA | 54..1223 | 23..1173 | 5175 | 97.3 | Plus |
| Cyp4ad1-RB | 1227 | CG2110-RB | 204..818 | 578..1173 | 2400 | 94.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8441382..8441664 | 579..297 | 1415 | 100 | Minus |
| 2R | 25286936 | 2R | 8442587..8442753 | 189..23 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 8440349..8440512 | 938..776 | 755 | 98.8 | Minus |
| 2R | 25286936 | 2R | 8440571..8440697 | 776..650 | 635 | 100 | Minus |
| 2R | 25286936 | 2R | 8441715..8441825 | 299..189 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 8440113..8440232 | 1053..938 | 405 | 95 | Minus |
| 2R | 25286936 | 2R | 8440755..8440825 | 649..579 | 355 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:12 has no hits.
FMO05570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:16 Download gff for
FMO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ad1-RA | 54..1128 | 23..1087 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:47 Download gff for
FMO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ad1-RA | 27..1101 | 23..1087 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:37 Download gff for
FMO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4ad1-RA | 54..1128 | 23..1087 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:37 Download gff for
FMO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8440571..8440697 | 650..776 | 100 | <- | Minus |
| 2R | 8440755..8440824 | 580..649 | 100 | <- | Minus |
| 2R | 8441382..8441661 | 300..579 | 100 | <- | Minus |
| 2R | 8441715..8441824 | 190..299 | 100 | <- | Minus |
| 2R | 8442587..8442753 | 23..189 | 100 | | Minus |
| 2R | 8440074..8440232 | 938..1087 | 93 | <- | Minus |
| 2R | 8440350..8440511 | 777..937 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:16 Download gff for
FMO05570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4327855..4328016 | 777..937 | 98 | <- | Minus |
| arm_2R | 4328076..4328202 | 650..776 | 100 | <- | Minus |
| arm_2R | 4328260..4328329 | 580..649 | 100 | <- | Minus |
| arm_2R | 4327579..4327737 | 938..1087 | 93 | <- | Minus |
| arm_2R | 4328887..4329166 | 300..579 | 100 | <- | Minus |
| arm_2R | 4329220..4329329 | 190..299 | 100 | <- | Minus |
| arm_2R | 4330092..4330258 | 23..189 | 100 | | Minus |
