FMO05571.5prime Sequence
714 bp (403 high quality bases) assembled on 2008-08-25
> FMO05571.5prime
CAGTCGACATGAGCAACAGCGAAGGAAGCGGCCACGAAAGTGGAATCCGT
ACACTGAATCGCAATGCGAATGGAAACGGCAATGGAGACCTCAGTCTGAT
GCAGGATCTGCAGCATAAGTACGCCTTCCTCGAGAATCTCTTCAGCAAGT
TCTGGAAGTCTATCATCAAGTCGAATTCCAATCTCAAACTGCAGTTGCGC
AATGTCAAGTGGAAGAATGCCAAGGCGAAGCCCGGCTGTGCCTACCAGCC
AACGGAGATCGAGCAGGTGGCCAATGTGATTACTCACGGCATTTGGATAC
TGCCCGCCGTTTTTGCGGCCATCAAGCTGTTTGAACGCTCCCTCCAGCGC
CAGCCAGTATCTGGTTGCTTGGGTCTACGGCGAAGCCCTGTGCATGCTCT
TCACGGGGTCCACCTTCTTCCATTGCTCCTGCCTATTGGCCCAACACAAA
CACCGAAAAATGGCAGGGCCGGGCCTGGCCCGCTGGCAAACTTTCAGGGG
CCAAAAACGGGCTCCATCCTGGGAAAGGGCAAAAACTTTGTTTTTTCCCC
GAATCAATTCCCGGGCTCAGCAAAAAAACCGTATTTCGGCTATTCCTGCT
GGAAAGTGCTTCTGGCATAGGCGGAAAAAATATCTCCACAGCCCCCCAAC
ATAAAGTGTGAGAATCTCTTTTTGTGTGAGTGAAAGCGCTCATATTTGTG
TACGCGACAACTCA
FMO05571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4615-RA | 1973 | CG4615-RA | 236..762 | 9..530 | 2165 | 95.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7100274..7100522 | 257..9 | 1245 | 100 | Minus |
| X | 23542271 | X | 7100026..7100201 | 432..256 | 790 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:52 has no hits.
FMO05571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:42 Download gff for
FMO05571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4615-RA | 227..684 | 1..457 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:49 Download gff for
FMO05571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4615-RA | 224..681 | 1..457 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:23 Download gff for
FMO05571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4615-RA | 227..684 | 1..457 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:23 Download gff for
FMO05571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7100274..7100526 | 1..257 | 98 | | Minus |
| X | 7100009..7100199 | 258..449 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:42 Download gff for
FMO05571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6994042..6994232 | 258..449 | 95 | <- | Minus |
| arm_X | 6994307..6994559 | 1..257 | 98 | | Minus |
