FMO05572.5prime Sequence
1224 bp (896 high quality bases) assembled on 2008-08-25
> FMO05572.5prime
CAGTCGACATGGGATATGATGACCGTGAACGCGATCGCGAGAGACGCCGA
CATCGTTCCCGCTCTCGGGACCGCCATCGCGAACGCTCCAGGGATCGACG
CCATCACCGGAACTCGAGGCGCAAGCCGTCGCTTTATTGGGATGTACCGC
CGCCGGGATTCGAGCACATCACCCCGATGCAATACAAAGCCATGCAGGCG
TCCGGACAAATCCCGGCAAGCGTTGTGCCGGATACACCACAAACGGCAGT
GCCCGTGGTCGGATCGACAATTACCCGACAGGCGCGTCGCCTGTACGTTG
GCAACATTCCGTTTGGCGTCACCGAGGAGGAAATGATGGAGTTCTTCAAC
CAACAGATGCATTTAGTTGGGCTCGCCCAGGCGGCCGGCAGTCCCGTCTT
GGCATGCCAAATTAACTTGGACAAAAACTTTGCTTTCCTCGAATTCCGAT
CGATTGATGAAACCACCCAGGCCATGGCATTCGATGGCATCAATTTGAAG
GGGCAGAGCTTAAAGATTAGGCGTCCGCACGATTACCAGCCCATGCCGGG
TATAACAGATACGCCGGCAATTAAGCCCGCTGTTGTTTCCAGTGGAGTTA
TTTCGACAGTGGTTCCGGACTCGCCTCACAAAATCTTCATCGGAGGTCTA
CCAAACTATCTGAATGACGATCAGGTTAAGGAACTGCTTTTGTCGTTTGG
CAAGCTACGAGCCTTCAACCTGGTTAAGGATGCCGCTACTGGGTTGAGTA
AGGGTTATGCTTTCTGTGAATATGTCGATCTTAACATCACAGATCAGTCG
ATTGCTGGCCTAAATGGAATGCAGCTGGGTGACAAAAAACTGATTGTCCA
CGAGCCAGTGTGGGCGCCAAGATTGCCCAGACCCCGGCCAACACCACTCA
GTCCGTAATGCTCCCAGTGCTGGCCTGTCCAATGTGTTGACCTCTGGACC
GCGACTGAGGTTCTTTGCTTGCTTCACATGTTACGCCCCGATGACCTGCG
GGACGAGGAGGAGTACTAGGACATCCTGGGAGGACATCAAGGAGGATGCA
CGAATTCGAGCTCGTGCGGGAGCGTGCAATTTCCAGGTCCATGGAGGGCG
TTCAAGTTCGGGTTGCCGCAAGGCTATTTGTCGAATTCACTTTGGTTCCG
ACGTGCCAAGGCGACCAGCACGTATCGGAGACTAATCGACGAGCGATGGT
GCTACACTCATTATTTTTGCACTA
FMO05572.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| U2af50-RD | 1473 | CG9998-RD | 163..1297 | 9..1139 | 4990 | 96.7 | Plus |
| U2af50-RA | 1527 | CG9998-RA | 217..1351 | 9..1139 | 4990 | 96.7 | Plus |
| U2af50-RC | 1371 | CG9998-RC | 73..1195 | 21..1139 | 4930 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16357643..16358207 | 585..21 | 2825 | 100 | Minus |
| X | 23542271 | X | 16356967..16357219 | 1046..796 | 815 | 91.7 | Minus |
| X | 23542271 | X | 16357295..16357419 | 797..673 | 610 | 99.2 | Minus |
| X | 23542271 | X | 16357481..16357573 | 677..585 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:59:52 has no hits.
FMO05572.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:30 Download gff for
FMO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1256 | 1..1046 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:32:50 Download gff for
FMO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1256 | 1..1046 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:24 Download gff for
FMO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| U2af50-RA | 212..1256 | 1..1046 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:24 Download gff for
FMO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16356967..16357217 | 798..1046 | 92 | <- | Minus |
| X | 16357295..16357417 | 675..797 | 99 | <- | Minus |
| X | 16357484..16357572 | 586..674 | 100 | <- | Minus |
| X | 16357643..16358206 | 22..585 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:30 Download gff for
FMO05572.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16251000..16251250 | 798..1046 | 92 | <- | Minus |
| arm_X | 16251328..16251450 | 675..797 | 99 | <- | Minus |
| arm_X | 16251517..16251605 | 586..674 | 100 | <- | Minus |
| arm_X | 16251676..16252239 | 22..585 | 100 | <- | Minus |
