FMO05577.5prime Sequence
1223 bp (1037 high quality bases) assembled on 2008-08-25
> FMO05577.5prime
CAGTCGACATGCCAAAATATCAGAAGCTTGACAACACACTGTTGCCCAAC
GCTCACGATGACGACTCTGAAGGGGGTTTCCCGGGTTACTTTGATGATAA
TCATCAAAGTTTGGGAATCCAACAGGATCCAGATACTAGAGATGATCGAC
TGTCAGATTACCAAGATAGGTATTACAGCGTTAACAACAATAGTGTTAAT
AGGGAGGTGGTGACAATTGGGTCAAATGTCGTCCGGGTTCCAGAGGAGCA
AACCTGGGAAGTGCCACTGTTGGGCGATTGTGGTGACAGTGCGAGAAACC
AGAGCTCGGAAACGGAATTTGATATGCAGCGTGAGTGCTGCAATCATCAA
CCAGGGTTCAGAGCCAACTCGAAGAGCAAATCTGCACAGGAGGCCAAGTA
TAAAATTATGCTCGCAGTTGCTCTGTGTTGCGTATTTATGATCATTGAAT
TTCTTGGCGGCTATGTCGCCGGAAGTCTGGCCATAATGACGGATGCCGCC
CATTTAGCATCTGATTGCATTAGTTTCGTCATCGGTCTAGTCGCCATATG
GATAGGGGGTCGCCCGCCAGACGAGCGTATGTCCTTTGGGTACAAACGCT
TTGAGGTTATCGGAGCTCTGGCTTCTATTTTGGGAATCTGGTTCGTAACT
ACCCTGCTCGTGGTTGTGGCTATTGAGAGGATCTTCTCCCAAGACTTTGA
ATTAAACGCCGATATGATGATGCTGATTTCAGGCATTGGCATAGTCATAA
ATATCGTAATGATGTTTGTTTTGCATGGATCCTGGTTCGTGAACGGGAAT
GGTCATGGCCACAGTCACAGCCATAGTCATAGTCACAGCCACAGTCACGG
AAACGGACATGAGCCAAACGATATTCTTTCACAAACACGTTCCAATTCGA
ACTTTCTTACGACCATTGGAAGTCAAAGCGCTTCAACGGCAGATGAGGAG
ATTCAATAAGAAAGAAATAATTCAACGAGCATAAGATTGTTATTACAAAT
GGGAAAAACTACTCTGACTGGACTTCAACATGAGCTGGCCACGAGAATAA
AAACTGACTGCTGCTGCATGATTCATTTGATGAGAACTATGCAGCATGCG
TTTTTTGGCCGCGTCTAATAAGTGTCAGGTGCCAGAATGCGTATCCCTGT
TATCTCATATCCATTATTGAAAATAACTACCTTGGCCTGGTTTCGGGAAT
CTCTGGTGCGCATCTCTCCCGGA
FMO05577.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:15:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ZnT41F-RD | 1983 | CG11163-RD | 300..1538 | 7..1206 | 5070 | 95.6 | Plus |
| ZnT41F-RC | 2042 | CG11163-RC | 359..1597 | 7..1206 | 5070 | 95.6 | Plus |
| ZnT41F-RB | 2461 | CG11163-RB | 778..2016 | 7..1206 | 5070 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5778201..5778496 | 302..7 | 1480 | 100 | Minus |
| 2R | 25286936 | 2R | 5776337..5776591 | 1008..758 | 1060 | 98 | Minus |
| 2R | 25286936 | 2R | 5777712..5777875 | 603..440 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 5777364..5777518 | 757..603 | 775 | 100 | Minus |
| 2R | 25286936 | 2R | 5777989..5778129 | 440..300 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:15:05 has no hits.
FMO05577.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:30 Download gff for
FMO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11163-RB | 772..1783 | 1..1008 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:07 Download gff for
FMO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11163-RC | 369..1380 | 1..1008 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:40 Download gff for
FMO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ZnT41F-RB | 772..1783 | 1..1008 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:40 Download gff for
FMO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5777989..5778126 | 303..440 | 100 | <- | Minus |
| 2R | 5778201..5778499 | 1..302 | 98 | | Minus |
| 2R | 5776337..5776591 | 758..1008 | 98 | <- | Minus |
| 2R | 5777364..5777517 | 604..757 | 100 | <- | Minus |
| 2R | 5777712..5777874 | 441..603 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:30 Download gff for
FMO05577.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1665217..1665379 | 441..603 | 100 | <- | Minus |
| arm_2R | 1665494..1665631 | 303..440 | 100 | <- | Minus |
| arm_2R | 1665706..1666004 | 1..302 | 98 | | Minus |
| arm_2R | 1663842..1664096 | 758..1008 | 98 | <- | Minus |
| arm_2R | 1664869..1665022 | 604..757 | 100 | <- | Minus |
