FMO05578.5prime Sequence
1202 bp (1024 high quality bases) assembled on 2008-08-25
> FMO05578.5prime
CAGTCGACATGGCCGTTGGACCGACGGAGGGCAAACAGCCGCCCTCAGAG
AGCTTCTCGCCCACGCACCACCAGATTATAGCACCCAGCCCCATCCTGGC
CGTTCCAACGCTGGCCTTCTCCGCCGCCCAGGTGGAGATCGTTTGCAAGA
CGCTCGAGGACTCCGGCGACATCGAGCGGTTGGCCCGCTTCCTCTGGAGC
CTGCCGGTGGCCCTGCCCAACATGCACGAGATCCTCAACTGCGAGGCGGT
GCTCCGTGCCCGCGCAGTGGTCGCCTACCATGTGGGCAACTTCAGGGAAC
TTTATGCAATAATAGAGAATCATAAGTTTACTAAGGCGTCCTACGGCAAA
CTGCAGGCCATGTGGCTGGAGGCCCACTACATTGAGGCCGAGAAGCTGCG
CGGTCGATCACTGGGCCCCGTGGACAAGTATCGGGTGCGAAAGAAGTTCC
CCCTGCCGCCGACGATCTGGGATGGCGAGCAGAAGACGCACTGCTTCAAG
GAGCGCACGCGGAGCCTACTGCGCGAATGGTACCTACAGGATCCCTACCC
GAATCCCACCAAGAAGCGGGAGCTGGCCAAGGCCACCGGCCTGAATCCCA
CGCAAGTGGGCAACTGGTTCAAGAACCGCCGCCAGCGGGATCGGGCTGCT
GCGGCCAAGAATCGCATCCAGCATAGCCAGAACAGCTCGGGAATGGGCTG
TCGGAGCCGGCGGGCGGACGGAGCTGCCTCACCAACGCCGTCGGACAGCT
CCGACTCGGACATCTCACTGGGCACCCACTCGCCGGTGCCGAGCAGCCTG
CAGCTGCAGCATAGTCCGGGCAGCACCTCCAACGGCGCCAACGACCGCGA
GGAGAGCTTGAGCGGGGACGACGACAGCCGCGGGATCTGAGCGGATCGCT
GCCACTGCCCCTCTCGCTGCCCTGCCGCTGGCTCGCCACCCACACGCGCC
CCACTGCGCGGGCTACGGGGCGGGCGGCGCAGACCCGAGACCTCTGACGG
TCGGCTGTCTGCCACCTCAGCTGGACGCGGCACATCTGTCAGCGCCGCTG
TACTGCAGCTCAGCAACTGAGGAATGTCGACAGTCATCAGCATTTCTGGC
TCGATCGACTGCCGATGCTTGACTTGACGGAATCGGGAACCCAGATACCG
TCTACGGGGCTAAGTGAGTGCGCTCAGGTGTCATGGAACTGCAATCCGCA
CC
FMO05578.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Optix-RC | 2668 | CG18455-RC | 676..1718 | 9..1031 | 4720 | 98 | Plus |
| Optix-RA | 2358 | CG18455-RA | 366..1408 | 9..1031 | 4720 | 98 | Plus |
| Optix-RB | 1470 | CG18455-RB | 133..520 | 664..1031 | 1445 | 94.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8031958..8032245 | 9..296 | 1440 | 100 | Plus |
| 2R | 25286936 | 2R | 8034290..8034540 | 414..664 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 8041192..8041462 | 664..932 | 1240 | 98.9 | Plus |
| 2R | 25286936 | 2R | 8033300..8033424 | 291..415 | 625 | 100 | Plus |
| 3L | 28110227 | 3L | 20790294..20790427 | 503..370 | 340 | 83.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:22 has no hits.
FMO05578.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:23 Download gff for
FMO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 366..1433 | 9..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:09 Download gff for
FMO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 326..1393 | 9..1051 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:01 Download gff for
FMO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Optix-RA | 366..1433 | 9..1051 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:01 Download gff for
FMO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8031958..8032244 | 9..295 | 100 | -> | Plus |
| 2R | 8033305..8033423 | 296..414 | 100 | -> | Plus |
| 2R | 8034291..8034540 | 415..664 | 100 | -> | Plus |
| 2R | 8041193..8041604 | 665..1051 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:23 Download gff for
FMO05578.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3919463..3919749 | 9..295 | 100 | -> | Plus |
| arm_2R | 3920810..3920928 | 296..414 | 100 | -> | Plus |
| arm_2R | 3921796..3922045 | 415..664 | 100 | -> | Plus |
| arm_2R | 3928698..3929109 | 665..1051 | 93 | | Plus |
