FMO05580.5prime Sequence
1149 bp (977 high quality bases) assembled on 2008-08-25
> FMO05580.5prime
CAGTCGACATGGACAGCGCCGGTAAAAATCGTTATGAACTTTTGTTCATG
GACGACGATGTCAGCGATCCATTAGATAATCTTGTGGCGCCGACGGCCGC
TGCTGCCGCAGCAGCAGCTGGCAAGAAGAAGCAACCGTCAGCTGCTGCTG
CAGCGGCCACCAAAACGACCGCCAACAAGGTGGCCAACAGCAATAACAAG
GCGAACGCAGGATCCAATATTGGTGGACCCAATGCCAAGAAACCAAATCA
GGCCGAAAAGGAGAACAAGCCCAATAATGCGTTAAACAAAACCGATGGCA
AGAAGTTCACTCCATCGGCCGACAACAAACAGCAGCAGTTCAATAATAAC
GCCAGCAGCAATTACAAACAACAGGGTGCTCCACGGCAAGGAGGTGGCGC
CAACCGAACACGTGAATTTGGTAGCGGTCAAGGACAGGGTCAAGGACAAG
GTGGCCAGCAGCAGCGCAGCGTAAACTTCCGTCAACAGAATGGCAATGCC
GAGACTCGTGAGCAGCGCAACAATCGCCGCAATGTCCGCGAAAACGTCGG
AGCACCCGATGGCCAGCAGTCGCGACCTTACCGCGGACCAGGTGGAGGCC
CAGGTGCTGGCGGAGATCGTCCCCAGCGTCAGAACCGCAACTACGATGGC
CAGAACAGGAAGCGCGAGTTCGACCGCCAGTCGGGTTCCGATAGAACTGG
TGTGAAGTCAATTGACAAACGCGATGGAGCTGGCTCCCACAACTGGGGAT
CGGTCAAGGAGGCTATTGATGATGTGAACAAGAACGAAAGCGAAACCAAT
GTGACCAATGCCGAGGGCGGCGCCAAGGCCGATGAATCTGGCACTGAACC
ACAAAACGAGCAGGCTACCGCCGAGGAGGAGCCAAAGAGCTGACCTTGGA
CGAGTGAAAGCACAGCAAGACAGCGCATCAGCAACTTTATATCGCAAGCT
GGAGAGTGAGACACAACAATGAGAAATGTCGTCTACTAGCACAGAGAGAG
ACGACAGCGAGAAGACTCGAGTACGACTGCTTTATCCAAGCGTGTGGCAG
CAACAGGCGTCTGAATCAGTTCACTCACGATGTCTCTTGCGAACTGCGTC
GGTACCGTGCTGAGCCAACCGTGATGGAGCGAACCCCACAGGGGCACCG
FMO05580.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vig-RB | 3164 | CG4170-RB | 188..1277 | 8..1061 | 4570 | 96.5 | Plus |
| vig-RA | 1918 | CG4170-RA | 225..1314 | 8..1061 | 4570 | 96.5 | Plus |
| vig-RC | 1838 | CG4170-RC | 145..1234 | 8..1061 | 4570 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15066934..15067628 | 702..8 | 3475 | 100 | Minus |
| 2L | 23513712 | 2L | 15065223..15065457 | 930..699 | 1010 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:04 has no hits.
FMO05580.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:01 Download gff for
FMO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 145..1087 | 8..943 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:10 Download gff for
FMO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RA | 203..1145 | 8..943 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:34 Download gff for
FMO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vig-RC | 145..1087 | 8..943 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:34 Download gff for
FMO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15065206..15065456 | 700..943 | 96 | <- | Minus |
| 2L | 15066937..15067628 | 8..699 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:01 Download gff for
FMO05580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15065206..15065456 | 700..943 | 96 | <- | Minus |
| arm_2L | 15066937..15067628 | 8..699 | 100 | | Minus |
