FMO05581.5prime Sequence
1265 bp (983 high quality bases) assembled on 2008-08-25
> FMO05581.5prime
CAGTCGACATGGCCGCCTTTCAGATGGGATCGGGTTACGCAGTGCCCATG
ACCCTCTTCCGGAACAACAGGGATCGTGCTGGCAAGGCCATCCTTAAGGA
GCTGCTGCCGGGCCTCAAGTTCAACGACGGCAACCTGCTGGTGCTCCTCG
AGGGCGGCAAGGACCAGAGCCTGTACAACACCGACGTGGACTACGTTTTC
CGGCAGGAGTCCTATTTCCAGTACTTGTTCGGTGTCAAGGAGCCGGGCTG
CTACGGCATCCTAACCATTGATGTGAAAACTGGTGCACAGAAAAGTGTTC
TCTTTGTTCCTCGCTTTCCCGATGAGTACGGCACCTGGATGGGCGAACTG
CTTGGGCTGCAGGAGTTCAAGGCCATGTACGAGGTGGACGAGGTGTTTTA
TGTTGACGAAATGAGTGTTTATCTGGAGGGGGCGTCGCCCAAGCTGATAC
TCACATTGAGTGGCACCAACAGCGATAGCGGGCTCACCCTTCAGCCGCCC
GACTTTGCTGGCAAGGAGAAGTATGTGACTGACTGCAATCTGCTGTATCC
AATTCTCTCTGAGTGCCGAGTGATCAAGTCACCCGAAGAGATCGAGGTGC
TGCGCTACGTGGCCAAGGTATCCTCGGACGCGCACATCAAGGTGATGCGG
TTTATGCGTCCCGGTAGAATGGAATTTGAGGGCGAATCCCTGTTCCTGCA
CCACGCCTACTCCGTGGGCGGCTGCCGGCATGCCTCCTACACCTGCATAT
GCGGCAGCGGAACGAACTCGTCGATCTTGCACTATGGGACACGCGGGCGC
ACCCAACAGCAAGCCCGTCCAGGATGGTGATCTCTGCCTGTTCGATATGG
GAGCCAACTATTGTGGCTATGCGGCCGACATAAACCTGCACATTCCCGGC
CAATGGAAAGTTCACCGACGACCAGAAGTTCATCTACAATGCCGTGCTGG
ATGCCCGCATGGCGGTCACAGAGTCAGCCCGTGACGGAGTCTCTGGGTTG
ACATGCCACAAGCTGCCGGGCAGGTGTTGCTGCCACCGCCTGAAGGAGGC
CGCATGCTTCAAGGGCGATGTTGGAAGAAAGCTCGAGGCAAGTGTTTCCG
GGCCGGTTTCCAGCACATGGCCTGGGCCACTTGAATCGGCTTGGATGTGC
ACGAAAGGTGGCGCTATACTGCCAAGGAATCAAGGCCCCAATGGACCGTG
GCTGAAACAAGTCGTGCTTGTTCCCGTCATCTCTTAGAGAGCGGGCGCAT
CGTAATATTGATTAC
FMO05581.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dip-C-RB | 1951 | CG5663-RB | 376..1571 | 8..1205 | 5235 | 96.7 | Plus |
| Dip-C-RA | 1747 | CG5663-RA | 172..1367 | 8..1205 | 5235 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12412242..12413384 | 1154..8 | 4925 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:24:44 has no hits.
FMO05581.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:38 Download gff for
FMO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 150..1298 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:31 Download gff for
FMO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 349..1497 | 1..1154 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:56 Download gff for
FMO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dip-C-RA | 166..1314 | 1..1154 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:56 Download gff for
FMO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12412198..12413387 | 1..1196 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:38 Download gff for
FMO05581.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8237920..8239109 | 1..1196 | 96 | | Minus |
