FMO05582.5prime Sequence
1238 bp (1037 high quality bases) assembled on 2008-08-25
> FMO05582.5prime
CAGTCGACATGGCCACAAGCAGCCAGCTGTTGCCCAATGGCAACTTGTCC
AGGAATGGCAAGACCAAGACAGAGGACGGTGAGGAGGTGGAAGCCGTTGT
TGGAGCTCGTGCAGCAGGTGCAGATGCCGGAGTAGCACTAACGGGACGAC
TAACAGGACACCCATCCACATCCGGAACGTTTATGAAACTGAAAACCTAT
CTCCTAGCTCTGCGTCCCTGGTCGCTGTCCGCCAGTCTGGTTCCAACGCT
GCTCGGCTCAGCCCTGGCCTACCGCTCCCAGTGGGCGGAGGAGTTTTCGC
TGGCCACCTTCTTTCTCACCGCCTTCACCGTGGTCACCGTCCACTGCGCC
GGCAACGTAGTTAACACCTATTTCGACTTCATCAAGGGCATTGACAAGCA
GAAAGCCGACGACCGCACGCTGGTGGATCACATACTCACCAAGGATGAGG
TGGTATCGCTGGGTGCCATTCTGTACATGGCTGGCTGTGGAGGATTTGTT
TTGCTGGCTGTGCTCAGTCCGGCGAAAATGGAGCACCTGGCACTGATCTA
CTTCGGGGGATTGTCCTCGAGCTTCCTGTACACCGGAGGCATTGGTTTCA
AGTACATCGCCCTGGGAGATCTGGTTATACTGATACTCTTTGGACCCATC
TCGGTGCTATTCGCCTTCATGTCGCAAACAGGTCATTTGGACTGGACGAC
AATGGGCTATGCGATTCCTTTGGCTCTCAACACGGAGGCCATCCTGCACA
GCAACAACACAAAGGGATGCGGACAACGATCGCCGGGCTGGAATCGTAAC
GCTCGCCATTTTGATAGGCCGTACAGCATCGCACGTTCTGTATGCCATGC
TGCTCTTTGCACCCTACTCATTGTTCTTCATCTTCGGTTTGAGTACTCTC
TGTGGTTCCTGCTGCCGCTGGTAACCCTGCCGCAGCGTTCAGATTGAGAA
CGTTTCCGCACGAACAGACGATGCATCTGGTGCCTCGGCAAACAGCCAGC
TGAACTTCTTTTTGCATCTTGTACGTGGGGCCCTGCTGTTGTGCCCATCA
GTTGCCACCTTTGGAATGCAAGAAATGCAAGCTTTCTAAACCATTCGTTG
GCGCCGGGCCCAGGTAATGTCTAAACTATCTATCTATCATATCACCACCT
AGCCTAAGAGAATCTGGCTGACATGCTGGATTCCCAATAAAAGCCGGCGG
CTCCCGAAGCTTCTGTAACACTCCAGAGGGAAGCTCTC
FMO05582.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| heix-RA | 3130 | CG5876-RA | 546..1623 | 8..1076 | 5085 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16297566..16298195 | 1069..448 | 2645 | 97.9 | Minus |
| 2L | 23513712 | 2L | 16298869..16299313 | 452..8 | 2225 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:13:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| invader2 | 5124 | invader2 INVADER2 5124bp | 717..767 | 362..312 | 111 | 68.6 | Minus |
FMO05582.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:10 Download gff for
FMO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heix-RA | 538..1623 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:00 Download gff for
FMO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heix-RA | 555..1640 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:50 Download gff for
FMO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| heix-RA | 538..1623 | 1..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:50 Download gff for
FMO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16297580..16298193 | 450..1056 | 98 | <- | Minus |
| 2L | 16298872..16299318 | 1..449 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:10 Download gff for
FMO05582.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16297580..16298193 | 450..1056 | 98 | <- | Minus |
| arm_2L | 16298872..16299318 | 1..449 | 99 | | Minus |
