FMO05583.5prime Sequence
817 bp (817 high quality bases) assembled on 2008-08-25
> FMO05583.5prime
CAGTCGACATGGCGCCCACCATATGCTCGGAGAAAAAGCAGCTGCGCGAA
ACGCGGCGACATCATGGCGTGGCCACAGCCGCCATTTCATCAGCATCCGC
AACCGCATCCACCGCATCATCGTCCTCGTCCTTGTCCGTGGGATCCACAT
CTGCAGCTGCCGCCACACAAGCTAGTTCGGTGCTCAACCATGTGGCCAAA
GGTTCGATGAACTCGATGAGCCGCCGTCGACCGGCGCGATTACAGCGCAG
GATGCCTCACATCCTTGCCCGCGTGTCCTCCTTCTCCACGGACACGAGCA
GCGGCGTGGAAACGGAGGTGGAGATGGACTCCGAGCAGAGGATGCAGCTG
GACGACGACCGCTACTCGGATGCCAGGATCCAGGGACTGCAGCAACAGCC
ACATTCCAGCAGCGACAACATCAAGACAGTATTACAGCCGACGACGGCTA
GCGGATATAGTAGCAAGCAGAACCGATCGGCCAGGGCCAAAAACTGTGAT
CGAGAGGTGCCGCTCCAGATAGAGGACGACCACGATGGCGACAGTGGGTA
CGAGTACAGCCAGGATCCCATAAAGGAGCAGCACATGTACCACCAGAATA
GCGAAGGCCTGTTGTCCATTGCCATCAAGACTATCAAGCTGGTGCAGCGC
AACAAGCTGCTGCAAAAGCGATTGGCCCAACTGCAGCTGGAGACCTCGGA
GTTCATTGCCTCGGTGCTGGCCAACCCGGAAAATCGCCAATTCCGTGACA
AAATGTCGCCAAAGGCAGAGGCCAAGGTCAGCAACATGCTGCTGCGCCAC
GCAAGCTTTCTAGACAT
FMO05583.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31324-RB | 3856 | CG31324-RB | 2002..2793 | 9..800 | 3960 | 100 | Plus |
| CG31324-RA | 1885 | CG31324-RA | 515..1306 | 9..800 | 3960 | 100 | Plus |
| CG31324-RC | 1256 | CG31324-RC | 70..677 | 193..800 | 3040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26129003..26129611 | 192..800 | 3045 | 100 | Plus |
| 3R | 32079331 | 3R | 26124474..26124657 | 9..192 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:01 has no hits.
FMO05583.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:59 Download gff for
FMO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31324-RA | 510..1312 | 2..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:02 Download gff for
FMO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31324-RA | 512..1314 | 2..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:32 Download gff for
FMO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31324-RA | 510..1312 | 2..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:32 Download gff for
FMO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26124469..26124657 | 2..192 | 97 | -> | Plus |
| 3R | 26129004..26129610 | 193..799 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:59 Download gff for
FMO05583.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21950191..21950379 | 2..192 | 97 | -> | Plus |
| arm_3R | 21954726..21955332 | 193..799 | 100 | <- | Plus |
