FMO05585.5prime Sequence
1175 bp (942 high quality bases) assembled on 2008-08-25
> FMO05585.5prime
CAGTCGACATGCAGAGTATAGGATGGACGCTGATCATGAAACGCGGCTGC
CTCTTTAGTTGCCGCAAGGAGACCCTGAACATAAACGGATCTCGATACAC
AATCCGCGAAAGGCTGGCGACGGGGGGCTTCAGTCTAATCGACCTTGGGG
AAAACGCCTCCACGCGACGTAGCTATGCGATAAAGCGCATCACCTGCCAC
AGCATCGATGATCAGAATATAGCTCTGCGAGAAATCGAAAACTGTCGAAA
AATTGACTCGGAAAACGTGATCCGGGTAGTGGATTACGAGCTGAAGGGCC
AGGCGGACATAGTTATAAACACAACGAGCACCTTGTTCATTGTGCTTCCC
TATTACAAGCACGGATCTCTTGCGGACCACCTTCAGCTGCGATCGCGGAA
ACAGGACCACATGCCCGAGGCCCAGATCCTGCAAATCTTTCTGGGCGTCT
GCGAGGGATTGAAGGCCATCCACGAGGCAATGCCGGTGCCTCTGGCCCAC
CGAGATCTAAAAACGGCCAACATCTGCCTGTCGGACTCTTTTGAGCCAAT
TATTGTGGATCTCGGGTCAATGACAGAAGCCCGACTGCAGATTGTGGGCC
AGACGGATGCTCAGCGCTTGCAGGACGAAGCCGAGGAGAGGAGCTCCATT
GTCTACCGGGCTCCAGAGTTATTTACCGTGAAAACATATTGCACAATTGA
CGAGCGCACTGACATATGGAGTCTTGGCTGTGTGCTCTATGCAATGTGCT
ACTTTAATTCACCCTACGATCCCATCTACGAGCGAGGTGACAGCGTGCCT
TTGGCTGTGCTCAGTGGAACATAAACATTCCAGAGGATTCAATTTACACA
GAGGACATGCACGAATTAATTAAGTACATGCTGCGATCAGATCCATGGAA
CGGGCATTCGTGTTTAGTGGTTATCGAAAGGACCCACGATCTGATACAGA
AACTGGAGGTTCGCTTGCCAGCTTCTAGACATTCGTTGCCGCGCGGCCCA
GGTAGTGTCATATCATATCATATCATATCATATCACACTAGCTAGAATCT
GTCATGACTAGTGCTGAATCCACAATAAACGCGCCACCGAAGTTCGACAT
TCGATGGATTTGAGTCCTACGGACTAACAGATCAGCGAGTCGATCATGCC
GCCTGCACTACGGAAACGTGTGAAT
FMO05585.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1227-RB | 1174 | CG1227-RB | 78..1037 | 9..967 | 4670 | 99.3 | Plus |
| CG1227-RA | 1415 | CG1227-RA | 319..1278 | 9..967 | 4670 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7248650..7249245 | 719..124 | 2980 | 100 | Minus |
| 3R | 32079331 | 3R | 7248456..7248592 | 854..719 | 620 | 98.5 | Minus |
| 3R | 32079331 | 3R | 7249304..7249420 | 125..9 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 7248288..7248403 | 967..852 | 440 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:33 has no hits.
FMO05585.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:14 Download gff for
FMO05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1227-RA | 313..1283 | 2..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:16 Download gff for
FMO05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1227-RA | 310..1280 | 2..973 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:08 Download gff for
FMO05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1227-RA | 313..1283 | 2..973 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:08 Download gff for
FMO05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7248288..7248401 | 854..967 | 95 | <- | Minus |
| 3R | 7248457..7248591 | 720..853 | 98 | <- | Minus |
| 3R | 7248650..7249244 | 125..719 | 100 | <- | Minus |
| 3R | 7249305..7249426 | 2..124 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:14 Download gff for
FMO05585.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3074010..3074123 | 854..967 | 95 | <- | Minus |
| arm_3R | 3074179..3074313 | 720..853 | 98 | <- | Minus |
| arm_3R | 3074372..3074966 | 125..719 | 100 | <- | Minus |
| arm_3R | 3075027..3075148 | 2..124 | 96 | | Minus |
