FMO05586.5prime Sequence
1220 bp (1031 high quality bases) assembled on 2008-08-25
> FMO05586.5prime
CAGTCGACATGGCGAAGAGCGTGCCACTGACCCAGGCCATTGGTGGTTAC
ATTTTCGGCATTCTCCAGGCCTGCATTCGCTTTGTTTTCCGGCTGATCTA
TGGCCAAAAGGGTGAGAGTGTTCCACCGATCACAGATGCCATTCTCTTGG
AGTCCGCCACATCGTTGGCACGGAAAATCCGCAAACAGGAGCTGAGCAGC
GTCCAGGTCTTGGAATCATTTATCCGGCGCATCAAAGAGGTGAATCCCAT
TCTCAACTGTGTCGTGGATGAACGTTACGATCAAGCTCTCAAGGAGGCAG
CCGAAGCAGATGCCCTGATCAAGTCTGGACAATACAGCACGGAGGAGTTG
GAGAAGGAGAAGCCCTTCCTGGGCGTGCCCATTACCACCAAGGATTGCAT
ATCCGTCAAGGGCATGCTGCACACAGCTGGACTCTTCGAACGTCGGGATG
TGCGTGCTGCGCGGGATGCGGACGCTATGGCCTTGATGCGCAAGGCGGGA
GCCATTCCCATAGCCCTCACAAATGTTTCCGAGGTGTGCATGTGGTGGGA
GAGCAACAATACGGTGCACGGCAGGACAAGGAATGCCTACGACACTAACC
GCATTGTCGGTGGCTCCAGCGGTGGCGAGGGCTGCATACAGTCGGCGGCT
GCCTCCGCCTTTGGCTTGGGCTCCGACATTGGCGGCTCCATTCGCATGCC
AGCCTTTTTCAATGGCATCTTTGGCCACAAGCCCAGCAAGTTGGTCGTCT
CCAATGTCGGTCAGTTCCCAGCGCCCTTCAGTGCCGAGCAGAACTCCTTC
CTCGGCCTGGGACCTATGTCACGATTTGCCGAGGACCTGCGACCCATGCT
AAAGATTATGGCTGGCGAGAAGGCGGCCCTGCTTAATCTGGACGAGGATG
TGGACCTAACAAAATGAAGTTCTTCTACCAAGAGTCCGATGGCGGCGCCG
CTTGTTTCCGCCGTTGATCCAGACTTAGAGAGGCATGACCGCGTGCACAG
CACTTGAAGAAAAGTTCGCAATCAGAAAGTGAGCCGCATCCAGCTGCCCA
CTTCGCAGTCGGCGCCATTGGTTTGCCACATGCCGACGCGTGCATGATCC
CCTACCAGCTAGCACTGAATTATGAACTCCACCACGTACTGGAACCTTCA
ATGTTACTCTCCGGCCTCAAGACACTCTATTGGCCTTCGACAGCTATCTA
TGTGAAATAGTGGCACCGTG
FMO05586.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8839-RE | 2071 | CG8839-RE | 199..1419 | 9..1198 | 5040 | 95.9 | Plus |
| CG8839-RA | 2082 | CG8839-RA | 210..1430 | 9..1198 | 5040 | 95.9 | Plus |
| CG8839-RC | 2143 | CG8839-RC | 271..1491 | 9..1198 | 5040 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12340572..12341141 | 977..411 | 2700 | 99.5 | Minus |
| 2R | 25286936 | 2R | 12341209..12341431 | 412..190 | 1115 | 100 | Minus |
| 2R | 25286936 | 2R | 12341483..12341670 | 196..9 | 925 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:07:46 has no hits.
FMO05586.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:41 Download gff for
FMO05586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..1396 | 1..1112 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:17 Download gff for
FMO05586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RA | 200..1331 | 1..1112 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:28 Download gff for
FMO05586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8839-RC | 265..1396 | 1..1112 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:28 Download gff for
FMO05586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12340566..12341140 | 412..982 | 99 | <- | Minus |
| 2R | 12341210..12341429 | 192..411 | 100 | <- | Minus |
| 2R | 12341488..12341676 | 1..191 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:41 Download gff for
FMO05586.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8228071..8228645 | 412..982 | 99 | <- | Minus |
| arm_2R | 8228715..8228934 | 192..411 | 100 | <- | Minus |
| arm_2R | 8228993..8229181 | 1..191 | 97 | | Minus |
