FMO05591.5prime Sequence
1209 bp (1021 high quality bases) assembled on 2008-08-25
> FMO05591.5prime
CAGTCGACATGTTGTGGAAATCGCTGATTGCGTTGTGCGTCATTGGGGCT
GCCGTGGCGGAGCAAACGCCCGTCTTTTTGTGGGGAGCCAACAGTGTGGC
GAAACCCTCCCTGAAGACGGTGTCCCAAGTGGAGTTTGCCGAGCAGTTGG
CTGCATTGCTGGAAGATCACATGGTCGTGGCCTTCGAGGAAAATGGCCTG
AGCAGCAAGGACTTCCTGTGCTCCAACTCCCAGGCGCAGTCCTGCTACGC
CCAGCTGCAGGGAGTGAGCCCCAAGACCTACTACACCAGCGTGGAGAACC
CCTCGGAGGCACTGCGCTCAGTGGCCGCCAAGCGCGAGCACAACTCCATC
GATGCCAGTGGAAAGCTGACCACGCCGGCCAAGTGTGCCGTAGGTACGGC
CCTGTTTGTGACCTTCGAGGACGCCGCCGAGAGCCGGGAGGCCAGTCTGG
AGTCACATGACGCCGCCATAGCTGCTATCAGCAAGCAGTTCGAGTGCAAG
GTGGCTTATCTGTACCTGGCCGCCCCCTCCACGGCTCCTGTGGTGCAGCG
TCGTACCCGCCGTGACACCGCCGCCACAACCGGTGGCATCATGTGGAAGT
CGACCAATCAGTTTCAGATCTTCTACACTGCCCTGCTCTACAACGGCAAC
CCCATCACCGTCACCGACCTCAAGCTCACCAACTCTAGCTCTACCAAGCT
ATCCGTTGTTATGGACACATCTGTCGCCGACAAGCCAATCACCTTTGACG
TTGTTTATAATGGCGGATACTTTAGTCTGAGCAATTTGGTCTACGACAAC
AACAACTTCCGCTCCAGCGGCGTGAATGCCCCAACCACGTTCTCTTACTC
GTGCGGCACCTCACCCTCGAGTCCGCGGCCGTCAACAACATGTACAACAC
CCTGAGCTTCAAGTCCCTGCAGCTGCAGCTCCCTTCGATGGTACGTACAA
GGAGGACTTTCCCTTCGGCGACTCCTGGGACTGTGTGGCTTCTGACCCCC
GGTATCCTGATGGGACTGTTTGTGTCGCCTACTGCTGTCAATCATGTCGT
CGGCGTCTGCTGATGATGAAATCAACACGATGACCGCTCACGAATCCCAA
GCAAGAACATATACACATCAATGCCGCGCGCGAGCAGCTTTCGAAATCTG
GCCGGGACAGTATTCCTAAATCAAATCCAATACTAATAGTAATCCACACA
TAGCCTATA
FMO05591.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| VhaAC45-RA | 1894 | CG8029-RA | 205..1334 | 9..1127 | 5130 | 98 | Plus |
| VhaAC45-RB | 1925 | CG8029-RB | 117..1246 | 9..1127 | 5130 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9208416..9209026 | 459..1062 | 2645 | 98.2 | Plus |
| 2R | 25286936 | 2R | 9208083..9208344 | 198..459 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 9207910..9208016 | 91..197 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 9207765..9207850 | 9..94 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:09:11 has no hits.
FMO05591.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:05 Download gff for
FMO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC45-RB | 110..1253 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:18 Download gff for
FMO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8029-RA | 196..1339 | 1..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:39 Download gff for
FMO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| VhaAC45-RB | 110..1253 | 1..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:39 Download gff for
FMO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9207758..9207850 | 1..94 | 96 | -> | Plus |
| 2R | 9207914..9208016 | 95..197 | 100 | -> | Plus |
| 2R | 9208083..9208344 | 198..459 | 100 | -> | Plus |
| 2R | 9208417..9209102 | 460..1134 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:05 Download gff for
FMO05591.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5095588..5095849 | 198..459 | 100 | -> | Plus |
| arm_2R | 5095263..5095355 | 1..94 | 96 | -> | Plus |
| arm_2R | 5095419..5095521 | 95..197 | 100 | -> | Plus |
| arm_2R | 5095922..5096607 | 460..1134 | 96 | | Plus |
