FMO05595.5prime Sequence
1206 bp (1020 high quality bases) assembled on 2008-08-25
> FMO05595.5prime
CAGTCGACATGATACACAGTCTGTTTATTGTAAACAGCGGCGGCGAGGTC
TTCCTGGAAAAGCATTGGCGCTCGGTTGTCTCGAGATCTGTGTGCGAATA
CTTCCTTGACGCCCAGCGCGCTGCTCCATATGATGTGCCGCCGGTGATAG
CCACGCCCCACTACTACCTGATTACAGTGCAAAGGGACACGGTGTCTTTG
GTCGCCGCCTGCAAGCAGGAGGTGCCGCCGCTCTTTGTCATCGAGTTCCT
GCATCGCGTGGTGGACACCTTCCAGGACTATTTCGGCGACTGCTCCGAGT
CCGTGATCAAGGACAACTATGTGGTCGTTTACGAGCTGCTGGACGAGATG
CTCGATAATGGCTTCCCACTGGCCACCGAGAGCAACATCCTCAAGGAGCT
GATCAAGCCGCCCAATATCCTGCGCACCATTGCCAACACGGTGACGGGCA
AGAGCAATGTAAGCACTACTTTGCCCTCGGGTCAGCTGTCGGCGGTTCGC
TGGCGCAGAAGCGGCGTGAGGTACACCAACAACGAGGCGTACTTCGATGT
CATCGAGGAGGTGGACGCTATCATTGATAAATCCGGATCCACGGTCTTTG
CCGAGATCCAGGGACACATCGACTGCTGCATTAAGTTATCCGGCATGCCA
GATCTGACGTTATCTTTCATGAATCCTCGCCTCTTCGACGACGTTTCCTT
CCATCCTTGCGTGCGCTACAAGCGCTGGGAGGCGGAGCGCCTGCTCTCCT
TTATCCCGCCCGACGGAAACTTCCGCCTGATGTCATATCACATTAGCTCT
CAGTCCGTGGTGGCCATACCCATCTACATCAGGCACAACTTTTCGATCAA
AACGGGTGAGCAGGGGCGTCTGGACCTCACGATTGGCCCGAGGAACACCT
TGGTCGCACCGTTGACAAGGTGAAGCTGGAGCTGACATGCCGCGGTGTGT
GCTTAATTGCCTATTGACCCCGATCAGGAAAGTATACCTTCGATTCCGGT
GACAGACGCTGTCCTGGGATGGGGACGGATCGATGGTTCAGTTGCTATAT
AGGGGATCGGGTTTCCATACGTCGTACGACCAACATCGAATGCCAATCCA
TCCGTAATGTCAGTCAAATCTCCCACCTGGCGTACCTGGCTAAGTTAATC
GCTGAACGTACGGCGAAATATACAGGCTTCACAGGCGCTCAAATCTGCTA
CCCAGG
FMO05595.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cm-RB | 1774 | CG3035-RB | 55..1193 | 9..1131 | 5120 | 97.5 | Plus |
| cm-RA | 1469 | CG3035-RA | 55..1193 | 9..1131 | 5120 | 97.5 | Plus |
| Inx7-RB | 1690 | CG2977-RB | 7..173 | 977..1131 | 375 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7009799..7010226 | 1039..618 | 1750 | 97.7 | Minus |
| X | 23542271 | X | 7010519..7010844 | 457..132 | 1630 | 100 | Minus |
| X | 23542271 | X | 7010283..7010442 | 617..458 | 800 | 100 | Minus |
| X | 23542271 | X | 7010899..7010988 | 132..43 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:30:28 has no hits.
FMO05595.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:52 Download gff for
FMO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..1187 | 3..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:13 Download gff for
FMO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 37..1177 | 3..1125 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:03 Download gff for
FMO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cm-RA | 47..1187 | 3..1125 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:03 Download gff for
FMO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7009774..7010226 | 618..1059 | 96 | <- | Minus |
| X | 7010283..7010442 | 458..617 | 100 | <- | Minus |
| X | 7010519..7010844 | 132..457 | 100 | <- | Minus |
| X | 7010900..7010987 | 44..131 | 100 | <- | Minus |
| X | 7011057..7011099 | 3..43 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:52 Download gff for
FMO05595.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6903807..6904259 | 618..1059 | 96 | <- | Minus |
| arm_X | 6904316..6904475 | 458..617 | 100 | <- | Minus |
| arm_X | 6904552..6904877 | 132..457 | 100 | <- | Minus |
| arm_X | 6904933..6905020 | 44..131 | 100 | <- | Minus |
| arm_X | 6905090..6905132 | 3..43 | 93 | | Minus |
