FMO05596.5prime Sequence
1164 bp (802 high quality bases) assembled on 2008-08-25
> FMO05596.5prime
CAGTCGACATGGATCGGGAGCTGAACGGGGCGATGAAGAGCGTGTCCATA
AATAGCGCCCAACTGAATGGTCACAATAACGGTGGCGGGCTAGATGAAAC
GGACCGCGTGGGCGTGGCACAGGGGGCGGCACTGAGTGCAACAGAGAAAA
TTACAACAACGACGGCGGCAGCTACAAAATCAGCGACAGCGACCACAAAT
GCAACCACAGCAACAGCCACAACCACAAATCTTACAACTCACAGCCCGCA
GCAAATTGCACTCTTATCCGCTGCAGAGAAAAGTAAGATGGTGCACGAGT
TATGTCAGCAGCTGCTTCTAACGGACGAACAGGTGCAGGAGCTGTGCTAC
CGCATCCTGCACGAGCTGCGCCGCGGCCTGGCCAAGGATACACATCCCAA
GGCGAATGTCAAGTGCTTCGTAACGTATGTGCAGGATCTGCCCAATGGCA
ATGAGCGTGGCAAGTTCTTGGCCTTGGATCTGGGTGGCACCAACTTCCGG
GTGCTGCTCATCCATCTGCAGGAGAACAACGATTTTCAAATGGAGTCCCG
CATCTATGCCATACCGCAGCACATTATGATTGGATCGGGTACACAGCTAT
TCGATCACATCGCCGAATGTCTGTCCAACTTTATGGCCGAGCACAATGTG
TACAAGGAGCGTTTGCCACTCGGTTTCACCTTCTCGTTCCGCTGCGCCAA
TTGGGTCTGACCAAGGGCCTGCTGGAGACCTGACCAAGGCTTCAACTGCG
CTGGCGTCTCACAAGATGTTGTCCAGTGCTAAAAGATGCCTCCCACCGCG
CGGCGAAGTCAAATCATGTGTGTGCCAACTCAATGACACCCTGGCCCCCG
AAAAGCTGCCCCGGGAAAAAACCCAATTGCCAAAATCGGCCTGATTGTCC
GCCCCGGTGCAATGCTGCATATGGACCGTGTGAAGGAGCGGAGCTCTCGC
CGCGAGGATCCGCGCAAGAAGCACGTTCTGATCAACACGGATGGGCGCAT
TCGCGACAATGCGCACTGACTTGTGCGCACCGATCGATCGGAAATCGATG
TGCCAAGCATCATCAGCACCAACGTCAAAAGATGAATCCGCATGAATGGC
GACCTGGTCCTGCTGGAAATGACCAGCGAACTTTCATGACAGATCGATGT
CTAAACCCGGACCA
FMO05596.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hex-A-RC | 4139 | CG3001-RC | 545..1625 | 9..1062 | 4305 | 94.9 | Plus |
| Hex-A-RB | 2512 | CG3001-RB | 330..1410 | 9..1062 | 4305 | 94.9 | Plus |
| Hex-A-RA | 2512 | CG3001-RA | 330..1410 | 9..1062 | 4305 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9586219..9587219 | 9..991 | 3690 | 95.4 | Plus |
| 3R | 32079331 | 3R | 26450890..26451020 | 375..505 | 250 | 79.4 | Plus |
| 2R | 25286936 | 2R | 15220031..15220147 | 509..393 | 210 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2290..2575 | 124..407 | 191 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2466..2654 | 154..344 | 176 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2409..2494 | 139..227 | 168 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1512..1589 | 148..225 | 156 | 66.7 | Plus |
FMO05596.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:57 Download gff for
FMO05596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 330..1172 | 9..840 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:14 Download gff for
FMO05596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RB | 335..1177 | 9..840 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:01 Download gff for
FMO05596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hex-A-RA | 330..1172 | 9..840 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:01 Download gff for
FMO05596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9586219..9587061 | 9..840 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:57 Download gff for
FMO05596.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9480252..9481094 | 9..840 | 97 | == | Plus |
