FMO05601.5prime Sequence
1141 bp (958 high quality bases) assembled on 2008-08-25
> FMO05601.5prime
CAGTCGACATGGACAACTGCGACCAGGACGCCAGCTTTCGGCTGAGCCAC
ATCAAGGAGGAGGTCAAGCCGGACATCTCGCAGCTGAACGACAGCAACAA
CAGCAGCTTTTCGCCCAAGGCCGAGAGTCCCGTGCCCTTCATGCAGGCCA
TGTCCATGGTCCACGTGCTGCCCGGCTCCAACTCCGCCAGCTCCAACAAC
AACAGCGCTGGAGATGCCCAAATGGCGCAGGCGCCCAATTCGGCTGGAGG
CTCTGCCGCCGCTGCAGTCCAGCAGCAGTATCCGCCTAACCATCCGCTGA
GCGGCAGCAAGCACCTCTGCTCTATTTGCGGGGATCGGGCCAGTGGCAAG
CACTACGGCGTGTACAGCTGTGAGGGCTGCAAGGGCTTCTTTAAACGCAC
AGTGCGCAAGGATCTCACATACGCTTGCAGGGAGAACCGCAACTGCATCA
TAGACAAGCGGCAGAGGAACCGCTGCCAGTACTGCCGCTACCAGAAGTGC
CTAACCTGCGGCATGAAGCGCGAAGCGGTCCAGGAGGAGCGTCAACGCGG
CGCCCGCTATGCGGCGGGTAGGCTCAGCGCCAGCGGAGGCGGCAGTAGCG
GTCCAGGTTCGGTAGGCGGATCCAGCTCTCAAGGCGGAGGAGGAGGAGGC
GGCGTTTCTGGCGGAATGGGCAGCGGCAAACGGTTCCGATGACTTCATGA
CCAATAGCGTGTCCAGGGATTTCTCGATCGAGCGCATCATAGAGGCCGAG
CAGCGAGCGGAGACCCAATGCGGCGATCGTGCACTGACGTTCCTGCGCGT
TGGTCCCTATTCCACAGTCCAGCCGGACTACAAGGGTGCCGTGTCGGCCC
TGTGCCAAGTGGTCACCAAACAGCTCTTCCAGATGGTCGATACGCGCGCA
TGATGCCGCACTTTGCCCAGGTGCCGCTGACGACCAGTGATTCTGCTGAA
GCGCTTGATCGAGCTGCTCATTGCGACCGTGCCTGATGCACATCGTTTCG
CCTGATGACGCGGTGCCGCGCGTGCGTGACTAGCCACGAATGGCTCTTGA
CGCAGATCCGGCCTCAGCCCACACTGTCCTCACGAGCTTTCTGTACCTCA
CAGTGGCAATCAAGCGGTGTTCAGCCTCCTTCGCACCCTAT
FMO05601.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| usp-RB | 3038 | CG4380-RB | 923..1940 | 9..1018 | 4740 | 98.3 | Plus |
| usp-RA | 2515 | CG4380-RA | 400..1417 | 9..1018 | 4740 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2039905..2040913 | 1010..9 | 4515 | 98.3 | Minus |
Blast to na_te.dros performed 2014-11-28 21:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 126..200 | 894..967 | 118 | 70.1 | Plus |
| HMS-Beagle2 | 7220 | HMS-Beagle2 Beagle2 7220bp | 7009..7083 | 894..967 | 118 | 70.1 | Plus |
| F-element | 4708 | F-element F 4708bp | 399..441 | 172..216 | 112 | 75.6 | Plus |
FMO05601.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:46 Download gff for
FMO05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 396..1423 | 1..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:24 Download gff for
FMO05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 367..1394 | 1..1026 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:01 Download gff for
FMO05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| usp-RA | 396..1423 | 1..1026 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:01 Download gff for
FMO05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2039890..2040917 | 1..1026 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:46 Download gff for
FMO05601.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1933923..1934950 | 1..1026 | 97 | | Minus |
