FMO05603.5prime Sequence
1223 bp (966 high quality bases) assembled on 2008-08-25
> FMO05603.5prime
CAGTCGACATGAAATACACTTTAGAGGGCAGCAATGCAAGAGTCATCGCC
AAAGCCGTACAATCGCTGTCCAAGGTGGGCAAGGAGATGTTCATCGAGAT
CGACCAGCAATCCTTGCAGATGCGGGCCATAAATGCCACCCAATCCGCAG
TGGGCAGCATATCGTTCAAAAGATCCATGTTCGAAGTGTATGACATGCCG
CCGCACTCAGATTTCTACTGCAAGATCTCCATGAAGGGATGTTTGGCCGT
GTTCCGCAACATGAATGAGGTGGAGTACTGTGAACTCAACTTGCTGGACA
ACCAGACCAACCTGCAGGTGAATCTCCGCTGTAAGCTGGAGACCACAAAG
GAGGCCACCATTTCCATCATAGACGACCAAAACATTAACACAAACATTAA
CACCGATCAGATGCCGAATATAATCCGTGGCGATCACAAGCTGTTGACGG
ATATATCCAATAACTTTAACTCCTCAGAGGAGGAACTTACTTTGGAGGCA
AACTCGGGCAGTGTGGTGGCCAAAAACTACATAGAAGGAGCCCGAGTTAA
TGATAAGTTCATGCGCACGCAGCTGAAACTTAAGCCCAGTGAATTTGAGC
AGTACCAGGTAACGAAGGAGACGGTCATTACATTCTGCATTAAGGAATTC
CGAGCATTTCTCCTCTTTCGCCGAGTGCTTAAATGCTTCGCTGACCCTGG
AGTTCGACGAAGCGGGCATGCCTTTCCTGCTCAAAATTAAGAAGCATGGC
GAGATTGAATGCTTGCTGATCATGTCCACGCTATCCCCCGATGATATAAG
CTTCTCGGAAGATTATTGTCAAAGGATCTGACAGTGCAGGATGAGGATGT
ACGAGCGGCGGGCCGCAAAGCGAAGAGCAGCGTTCGAAGCCGAATGTGAC
CAACAACGCAAAGGCAGCCTCTTCGGAACCGGCTGCATGGCAGCAAACGG
CGAGTTGAGGAGACCCAATTAAGATCGAGCCTAGATAATCCACTGTTTCA
GTTCGGACTCGAGGCGCATCTGTTCAGCACCCTCCCATCTAGCGAGTGAC
ACTGTGTTCTGATTGAAGATGAAGGCGGAACAAGAGCCTCATGTCTGGCG
CCGCGGATGCCGCTTGAGGCCAGCATGCACTGCTCAGACCGCGACGCGAG
TTGCTTACACCATACACTTAAACTAACGGCGAAGTCTCTCGGAAGAGACG
AACCATATCCCCATACTCACGTG
FMO05603.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad9-RB | 1440 | CG3945-RB | 70..1203 | 9..1127 | 5025 | 97.4 | Plus |
| Rad9-RA | 1779 | CG3945-RA | 70..1203 | 9..1127 | 5025 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18871229..18871853 | 1039..422 | 2485 | 97.1 | Minus |
| 3L | 28110227 | 3L | 18872166..18872396 | 271..41 | 1155 | 100 | Minus |
| 3L | 28110227 | 3L | 18871962..18872115 | 421..268 | 770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:42 has no hits.
FMO05603.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:02 Download gff for
FMO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad9-RA | 70..1222 | 9..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:27 Download gff for
FMO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad9-RB | 60..1212 | 9..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:08 Download gff for
FMO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad9-RA | 70..1222 | 9..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:08 Download gff for
FMO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18871962..18872113 | 270..421 | 100 | <- | Minus |
| 3L | 18872168..18872394 | 43..269 | 100 | <- | Minus |
| 3L | 18872451..18872484 | 9..42 | 100 | | Minus |
| 3L | 18871114..18871853 | 422..1142 | 95 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:02 Download gff for
FMO05603.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18865062..18865213 | 270..421 | 100 | <- | Minus |
| arm_3L | 18865268..18865494 | 43..269 | 100 | <- | Minus |
| arm_3L | 18865551..18865584 | 9..42 | 100 | | Minus |
| arm_3L | 18864214..18864953 | 422..1142 | 95 | <- | Minus |
