FMO05604.5prime Sequence
906 bp (842 high quality bases) assembled on 2008-08-25
> FMO05604.5prime
CTTTTACGAACTTATCAGTCGACATGAAGAAGCGCACTAATTTACGAGGC
ACCCCGACCTCGTCGGGCGACGCGCTACTGGACACCTCCTTCTCCTCCGC
CGGCGATGCTGAGCGGGATCATCCCGCCTACAAATCAGGCGCGGCCAGTG
CCCCTGCCACGCCCACCAAGCGACGGGATGGCAGCGATGGCAGTGTCAGC
AGCGCGGGAGCACGCAGGAAGCGCAAGGACGAGATCGCCCAGACATTTGT
GATCGTCAACGAACGTCCCGTGGACGACATATCGCTGGACTTCTTCTACA
AGCCACACACCATCACCTTGCTGGCTGTTTCGGTGCTCGCCGTCATGTAC
TTTGCGTTCGTCAGAAACGAGGCGAACGTGGATGAGAATCTCTGGGCCGG
CCTCCTCTGCATTGTGTTCTTCTTTCTGATCGTCTCGGTGATTGCATTTC
CCAATGGACCCTTCACACGACCCCATCCCGCCGTCTGGCGGATATTATTC
GGATGCTCTGTGCTGTACCTGCTGACGCTACAATTCCTGATGTTCCAAAA
CTACCCGACTATCAGGAGCATATTCTACTGGATTGATCCAAAGTTGAAGA
ACTTCCATATCTATATGGAAAAGGAGTATGGCGTCAATTGTTCGGACATC
AGTTGGGATCGCGTTAAAGGCCACTTGGACGTCTTTGCCTGGGGTCACTT
CTTTGGGCTGGGCCTTTAAGGCCATCCTCATTCGTACATGGGCATTCTGT
GGGCCATTTTCTGTGATGTGGGAGATTACCGAATTACCTTTGCGCACTTG
CTTGCTCAACTTCATCGAGTGCTGGTGGGATGCCCTCATCCTGAATGTGA
TCTCTGCAACGGTCTCGGGCATTTGGATGGTCTGAGACCGCCAGATTCTG
GAAATG
FMO05604.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4825-RB | 2046 | CG4825-RB | 349..1233 | 24..906 | 4060 | 97.9 | Plus |
| CG4825-RA | 1896 | CG4825-RA | 349..1233 | 24..906 | 4060 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20525486..20525826 | 364..24 | 1675 | 99.4 | Minus |
| 3L | 28110227 | 3L | 20524254..20524516 | 624..362 | 1300 | 99.6 | Minus |
| 3L | 28110227 | 3L | 20523940..20524197 | 880..622 | 900 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:08:12 has no hits.
FMO05604.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:57 Download gff for
FMO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 344..1233 | 17..906 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:28 Download gff for
FMO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 351..1240 | 17..906 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:40 Download gff for
FMO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4825-RA | 344..1233 | 17..906 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:40 Download gff for
FMO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20523911..20524195 | 624..906 | 94 | <- | Minus |
| 3L | 20524255..20524513 | 365..623 | 99 | <- | Minus |
| 3L | 20525486..20525831 | 17..364 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:57 Download gff for
FMO05604.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20517355..20517613 | 365..623 | 99 | <- | Minus |
| arm_3L | 20518586..20518931 | 17..364 | 98 | | Minus |
| arm_3L | 20517011..20517295 | 624..906 | 94 | <- | Minus |
