FMO05605.5prime Sequence
1040 bp (997 high quality bases) assembled on 2008-08-25
> FMO05605.5prime
CAGTCGACATGATCAACATGGACATTAGCGTTACGCCCAATTACTCGTAC
ATCTTCGACTTCGAGAACGATTTCATACACCAGCGGACGCGCAAATGGAT
GCTAGAGAACTGGACATGGGTGTTCTACTACTGCGGCATCTACATGCTGG
TCATCTTCGGTGGTCAGCACTTTATGCAAAATCGGCCTAGATTCCAATTG
CGCGGCCCGCTGATCATATGGAACACCTTGCTGGCCATGTTCAGCATCAT
GGGTGCTGCCCGAACGGCGCCGGAGCTGATTCACGTGCTGCGTCACTACG
GACTCTTCCACTCCGTCTGCGTGCCCAGCTACATCGAGCAAGATCGCGTG
TGCGGCTTCTGGACCTGGCTCTTCGTGCTCAGCAAACTGCCGGAGCTGGG
CGACACGATATTCATTGTGCTCCGCAAGCAGCCACTCATCTTTTTGCACT
GGTATCACCACATCACCGTGCTGATCTACTCGTGGTTCAGCTATACGGAA
TATACCAGCTCTGCCCGCTGGTTCATCGTGATGAACTACTGCGTGCACTC
GGTGATGTACAGCTACTATGCTCTGAAGGCGGCCCGCTTCAATCCGCCCA
GGTTCATCTCGATGATCATCACGTCGCTGCAGCTGGCTCAGATGATCATC
GGATGTGCGATCAACGTGTGGGCCAATGGCTTCCTGAAGACGCACGGCAC
CTCCTCCTGTCACATCTCGCAGCGCAACATCAATCTGTCGATCGCCATGT
ACTCCAGCTACTTTGTCCTGTTCGCGCGCTTCTTCTACAAGGCGTACCTG
GGCGCCCGGTGGTCACAAGAGCCGGCGCATGGCCGCCTCCCTGGCAGCCC
AGAATGTGGTCAAGCAGTCGAGCAGCCCCCAGCAGGGCAGCGAGAGCTCC
AGTTCATCGGCGCTGGCGAGGATCAGGCAGCCTATCTGCGCAGGGCCAAG
CGGCAGGCAAGCTTTCTAGACATTCGTTTGGCGCGCGGCCCAGGTAGTGG
TCATATTCATAATCATATCATATCATATCAACTAGCCTAG
FMO05605.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Baldspot-RB | 2445 | CG3971-RB | 261..1202 | 9..950 | 4635 | 99.6 | Plus |
| Baldspot-RA | 2784 | CG3971-RA | 201..1142 | 9..950 | 4635 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16650084..16650587 | 950..447 | 2380 | 99 | Minus |
| 3L | 28110227 | 3L | 16659230..16659411 | 190..9 | 910 | 100 | Minus |
| 3L | 28110227 | 3L | 16651398..16651537 | 328..189 | 700 | 100 | Minus |
| 3L | 28110227 | 3L | 16651130..16651258 | 454..326 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:51 has no hits.
FMO05605.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:23 Download gff for
FMO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RA | 194..1151 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:30 Download gff for
FMO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RB | 266..1223 | 1..960 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:16 Download gff for
FMO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Baldspot-RA | 194..1151 | 1..960 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:16 Download gff for
FMO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16650074..16650582 | 452..960 | 98 | <- | Minus |
| 3L | 16651133..16651255 | 329..451 | 100 | <- | Minus |
| 3L | 16651398..16651535 | 191..328 | 100 | <- | Minus |
| 3L | 16659230..16659418 | 1..190 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:23 Download gff for
FMO05605.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16643174..16643682 | 452..960 | 98 | <- | Minus |
| arm_3L | 16644233..16644355 | 329..451 | 100 | <- | Minus |
| arm_3L | 16644498..16644635 | 191..328 | 100 | <- | Minus |
| arm_3L | 16652330..16652518 | 1..190 | 97 | | Minus |
