FMO05606.5prime Sequence
1034 bp (962 high quality bases) assembled on 2008-08-25
> FMO05606.5prime
CAGTCGACATGTCGCACTTCACCTGCCTGAACTGCGATGCCCGCTTCGCC
AGCGCGGATGTGCAGCGGAATCACTACAAGACCGACTGGCATCGCTACAA
TCTGAAGCGCAGGGTGGCCCAGCTGCCGCCCGTTACGGCCGAGGAGTTCC
AGCAGCGCGTTCTTAGCGCCCGCAGCGCCACGGACGCGGCACTCGAGGAG
CAGAACCTAAGTGTCTACTGCCACGCCTGCAGACGCCAATTCGCCAGCCA
GAAGGCGCACGACAACCACCTGAACAGCCGCAAGCACAAGGAGCTGCTGG
CCCGCTTCGAGCGCGAGCAGATGACAGCTAGCGGCGGCAGCGCCAGCACC
GCCACATCCGTGTGCACGCGCAGCGTCGTGGAGCAGCGGCCCCATCCGGC
CCTGGCCGCCGCAGCCGCTGGCAAGGGTCGACTGGCCTTCGCGGAGCGGG
TGGTCAAGGCCAATAACGACGAGGAGATGGTCGACGAGGACGACGATGAT
TTCGAGGACATTGAAGAGGAGGAGGTGGATTCCGATGAGTGGGACAAGAT
ACCCGAGAATCCGCTGACCGAGCGCGACTGCCTGTTCTGCACACATGCCA
GCGAGGATCTGGTGGAGAACCTAAAGCACATGTCCGTGGCGCACTCGTTC
TTCATTCCGGACACCGAGTACTGCACGGACATCGAGGGCCTTCTGTACTA
CCTGGGCGAGAAGGTGGCCAACTACTTCATCTGCCTGTTCTGCAACGATC
GCGGCAAGACCTTCTATTCCCTGGACGCCGTGCGCAAACACATGATCGAC
AAGGGCCACTGCCAGATGCTGCACGAGGGTGTGGCGCTGGCCGAGTATGC
CGAATACTACGACTACAGCAGCAGTATCCGGACATAATGAAGGCTTGACA
TTGACGAGAGGTGGTGCCGGATCTGCTCGATGGCGATGATTATCACTGTG
CTTGCCTCAAGCGCCGGTCATTGTCATCGCTCCTGCTTCGCTACTACAAG
CAGCGTCTTCGTCCGGAACGCGCCGTCGTCATCA
FMO05606.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6769-RB | 1543 | CG6769-RB | 163..1195 | 9..1034 | 4855 | 98.5 | Plus |
| CG6769-RA | 1468 | CG6769-RA | 163..1195 | 9..1034 | 4855 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17861164..17861681 | 9..526 | 2590 | 100 | Plus |
| X | 23542271 | X | 17861836..17862188 | 523..875 | 1765 | 100 | Plus |
| X | 23542271 | X | 17862286..17862427 | 897..1034 | 365 | 88.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:30:51 has no hits.
FMO05606.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:03 Download gff for
FMO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6769-RA | 153..1194 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:31 Download gff for
FMO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6769-RA | 227..1268 | 1..1033 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:15 Download gff for
FMO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6769-RA | 153..1194 | 1..1033 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:15 Download gff for
FMO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17861154..17861679 | 1..524 | 99 | -> | Plus |
| X | 17861838..17862200 | 525..885 | 99 | -> | Plus |
| X | 17862274..17862426 | 886..1033 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:03 Download gff for
FMO05606.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17755187..17755712 | 1..524 | 99 | -> | Plus |
| arm_X | 17755871..17756233 | 525..885 | 99 | -> | Plus |
| arm_X | 17756307..17756459 | 886..1033 | 91 | | Plus |
