FMO05610.5prime Sequence
1254 bp (946 high quality bases) assembled on 2008-08-25
> FMO05610.5prime
CAGTCGACATGGGTCGCTGGGGACGGCAGAGTCCGGTGCTGGAGCCGCCG
GACCCACAGATGCAGACGACGCCCCCGCCGCCCACTCTGCCGCCAAGGAC
GTTTATGCGACAGTCGAGCATCACGAAAATCGGCAACATGCTCAACACGG
CCATCAACATCAATGGAGCCAAGAAGCCAGCAAGTAATGGAGAGGCGTCT
TGGTGCTTCTCACAGATTAAAGGCGCCCTAGACGATGATGTCACGGATGC
AGACATCATATCCTGCGTGGAATTCAATCACGATGGCGAGCTGCTGGCCA
CTGGTGACAAGGGCGGTCGCGTCGTCATCTTTCAGCGTGATCCTGCCTCA
AAAGCCGCCAATCCGAGACGCGGCGAATACAATGTCTATTCGACATTCCA
ATCGCACGAGCCCGAATTCGACTACCTCAAGTCCCTGGAGATTGAGGAGA
AGATAAACAAGATCCGGTGGCTGCAACAAAAGAATCCCGTGCACTTTCTG
CTCTCGACCAACGACAAGACAGTCAAATTGTGGAAGGTCAGTGAGCGTGA
CAAGTCGTTCGGCGGCTACAACACGAAGGAGGAGAACGGACTGATCCGGG
ATCCACAGAATGTAACGGCCCTCCGAGTGCCATCCGTGAAGCAGATACCA
CTGCTGGTGGAGGCCTCCCCACGGCGCACCTTCGCCAATGCACACACCTA
TCACATCAATTCAATAAGCGTTAATTCGGATCAGGAGACCTTCTTGTCGG
CCGACGACCTGCGGATCAATCTGTGGCACTTGGAGGTGGTCAACCAGAGC
TACACATTGTCGACATCAAGCCTACCCTACATGGAAGGAGCTAACAGAGG
TGATCACCGCGTGCGATTTCCATCCGACCGAGTGCATTGTGTTTGTTCTA
CTCGAGCTCTAAAGGCACATACGATTATGTTGATATGCGGTTCGGGGCGT
TATGGCGACCGGCACAGCAAACAGTTCGAGGAGCCCGAAAATCCAACGAT
TCGCAGCTTTTTCATGAAATAATCACTCCATCATCGATGGTGAAACTAAG
CAACTCGGGTTCGCTCCTGATCCTCCAGGGATTCTTGAACCTTCAAGTGT
GGGGATCTGGCAATTGAAACAAAGCCCATATTGGAACTTATTCCGGGTTC
TGAAATACCTGTGCGCGCAGTCTTGTTTCTCGTGTTCACAAAATAGACTT
GCATCTTTCAAAAGTTTCGAATGTGTTGTTTGTAAAAGAGCGAGAGGAGC
ACGC
FMO05610.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:45:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tws-RI | 3856 | CG6235-RI | 339..1456 | 9..1129 | 4885 | 96.6 | Plus |
| tws-RF | 3664 | CG6235-RF | 147..1264 | 9..1129 | 4885 | 96.6 | Plus |
| tws-RA | 2520 | CG6235-RA | 518..1635 | 9..1129 | 4885 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:45:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10128711..10129436 | 1060..333 | 2905 | 96.3 | Minus |
| 3R | 32079331 | 3R | 10134815..10134993 | 187..9 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 10129495..10129646 | 335..184 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:45:44 has no hits.
FMO05610.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:20 Download gff for
FMO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RA | 509..1567 | 1..1060 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:23 Download gff for
FMO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RF | 138..1196 | 1..1060 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:14 Download gff for
FMO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tws-RA | 509..1567 | 1..1060 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:14 Download gff for
FMO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10128711..10129433 | 336..1060 | 96 | <- | Minus |
| 3R | 10129495..10129646 | 184..335 | 100 | <- | Minus |
| 3R | 10134819..10135002 | 1..183 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:20 Download gff for
FMO05610.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5954433..5955155 | 336..1060 | 96 | <- | Minus |
| arm_3R | 5955217..5955368 | 184..335 | 100 | <- | Minus |
| arm_3R | 5960541..5960724 | 1..183 | 97 | | Minus |
