FMO05613.5prime Sequence
1168 bp (972 high quality bases) assembled on 2008-08-25
> FMO05613.5prime
CAGTCGACATGGAGTGCTGTTTATCGGAGGAGGCCAAGGAACAAAAGCGC
ATCAATCAGGAAATCGAGAAGCAGTTGCGCCGGGACAAGAGAGATGCGCG
CCGCGAGCTTAAACTGCTACTACTGGGCACTGGCGAGTCCGGGAAGTCCA
CATTCATCAAACAGATGCGTATTATCCACGGCAGCGGTTACTCGGACGAG
GACAAGCGTGGGTACATCAAGCTGGTTTTTCAGAACATATTCATGGCCAT
GCAGTCAATGATCAAGGCCATGGATATGCTGAAGATTTCCTACGGCCAGG
GAGAGCATAGTGAACTGGCCGATCTGGTGATGAGCATCGATTATGAGACC
GTTACCACGTTCGAGGATCCATACTTGAATGCCATCAAAACGCTTTGGGA
CGATGCTGGCATCCAGGAGTGCTATGATCGTCGTAGGGAATATCAGCTGA
CTGATTCAGCCAAATATTATCTGAAGGATCTCGATCGTGTGGCTCAACCT
GCATATTTACCCACTGAGCAAGACATTTTAAGAGTTCGTGTGCCCACAAC
AGGGATAATTGAGTATCCCTTTGATTTAGAAGAAATCAGATTTAGAATGG
TAGACGTCGGTGGTCAGCGATCCGAGAGAAGAAAGTGGATTCATTGCTTT
GAGATGTGACATCAATTATATTTTTGGTAGCGCTATCGGAGTACGATCAA
ATCTTGTTTTGAATCTGATAATGAGAATCGAATGGAGGAATCTAAAGCTT
TATTTCGTACTATAATTACATACCCTTGGTTTCAAATTCGTCAGTTATTC
TTTCCTGGAATAAGAAGGACTTGTTGGAAGAGAAAATAATGTATTCGCAT
TTGGTAGACTTATTTTCCTGAATACGATGGTCCTCAGCGAGATGCATAAC
GGCCGAGAGTTTATACTGCGAATGTTTGTAGATTTAAATCCAGATTCGAA
AAATTATCTATTCTCATTTCACGTGTGCTAAGATACGAAAATATAGTTGT
GTTTGCAGCTGTTAGACACATCTGCATCGACTAGAATTAATGTCCAGCTT
CTAGACATCGTTGGCGCGGTCAGTATGGCCTATCCAACTAATCTAATCTA
ATCACTAGCCTAGAATCTGGCTGACTGCTGATCATAAGCGGCACAGAGTC
GAAATCCATGGATCTTGG
FMO05613.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG45086-RB | 3050 | CG45086-RB | 1314..2329 | 8..1014 | 4730 | 98.5 | Plus |
| CG45086-RA | 3017 | CG45086-RA | 1281..2296 | 8..1014 | 4730 | 98.5 | Plus |
| Galphaq-RK | 5648 | CG17759-RK | 535..1550 | 8..1014 | 4730 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12616539..12616725 | 126..312 | 935 | 100 | Plus |
| 2R | 25286936 | 2R | 12623908..12624087 | 133..312 | 870 | 98.9 | Plus |
| 2R | 25286936 | 2R | 12616787..12616941 | 312..466 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 12624149..12624294 | 312..457 | 700 | 98.6 | Plus |
| 2R | 25286936 | 2R | 12617985..12618142 | 724..881 | 650 | 96.9 | Plus |
| 2R | 25286936 | 2R | 12617072..12617200 | 467..595 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 12616296..12616415 | 8..127 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 12617793..12617924 | 594..725 | 565 | 98.5 | Plus |
| 2R | 25286936 | 2R | 12627238..12627383 | 313..458 | 460 | 87.7 | Plus |
| 2R | 25286936 | 2R | 12618442..12618547 | 879..980 | 350 | 95.3 | Plus |
| 2R | 25286936 | 2R | 12624752..12624909 | 724..881 | 245 | 79.9 | Plus |
| 2R | 25286936 | 2R | 12627785..12627870 | 594..678 | 230 | 87.2 | Plus |
| 2R | 25286936 | 2R | 12627969..12628126 | 724..881 | 185 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:08:34 has no hits.
FMO05613.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:12 Download gff for
FMO05613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphaq-RC | 494..1538 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:38 Download gff for
FMO05613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galpha49B-RC | 493..1537 | 1..1030 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:42:52 Download gff for
FMO05613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Galphaq-RK | 527..1571 | 1..1030 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:42:52 Download gff for
FMO05613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12616288..12616414 | 1..126 | 96 | -> | Plus |
| 2R | 12616540..12616724 | 127..311 | 100 | -> | Plus |
| 2R | 12616787..12616941 | 312..466 | 100 | -> | Plus |
| 2R | 12617072..12617200 | 467..595 | 100 | -> | Plus |
| 2R | 12617795..12617924 | 596..725 | 98 | -> | Plus |
| 2R | 12617987..12618140 | 726..879 | 97 | -> | Plus |
| 2R | 12618443..12618550 | 880..982 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:12 Download gff for
FMO05613.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8505300..8505429 | 596..725 | 98 | -> | Plus |
| arm_2R | 8505492..8505645 | 726..879 | 97 | -> | Plus |
| arm_2R | 8505948..8506055 | 880..982 | 95 | -> | Plus |
| arm_2R | 8504577..8504705 | 467..595 | 100 | -> | Plus |
| arm_2R | 8503793..8503919 | 1..126 | 96 | -> | Plus |
| arm_2R | 8504045..8504229 | 127..311 | 100 | -> | Plus |
| arm_2R | 8504292..8504446 | 312..466 | 100 | -> | Plus |
