Clone FMO05614 Report

Search the DGRC for FMO05614

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:56
Well:14
Vector:pMK33-CFH-BD
Associated Gene/TranscriptGad1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05614.5prime Sequence

1223 bp (988 high quality bases) assembled on 2008-08-25

> FMO05614.5prime
CAGTCGACATGTCGCTGAATCCCAACGGGTATAAACTGTCCGAGAGGACG
GGCAAACTGACGGCATATGATCTCATGCCCACAACAGTGACCGCTGGACC
GGAGACACGGGAGTTCCTGCTGAAGGTAATCGATGTGCTGCTGGACTTTG
TGAAGGCCACCAACGACCGGAACGAGAAGGTTCTGGACTTCCACCATCCC
GAGGACATGAAGCGGCTGCTCGATCTGGATGTGCCCGATCGCGCCTTGCC
ACTGCAGCAGCTCATCGAGGACTGTGCCACCACATTGAAGTACCAAGTTA
AGACGGGACATCCCCACTTCTTCAATCAGCTGTCCAACGGTCTGGACCTG
ATCTCCATGGCGGGTGAGTGGCTGACGGCCACTGCGAACACCAACATGTT
CACCTACGAGATTGCACCAGTTTTCATTCTCATGGAGAATGTGGTGCTGA
CCAAGATGCGTGAGATCATTGGCTGGTCGGGTGGCGATTCCATTTTGGCA
CCCGGAGGTTCCATCTCCAATCTGTATGCCTTCCTGGCAGCTCGTCACAA
GATGTTCCCGAACTACAAGGAGCACGGCTCGGTGGGATTGCCCGGCACAC
TGGTGATGTTCACCTCGGATCAGTGCCATTACTCGATCAAATCATGCGCT
GCCGTTTGTGGACTGGGCACCGATCACTGCATTGTGGTGCCATCGGATGA
GCACGGCAAGATGATCACCTCGGAGCTGGAGCGCCTGATCCTGGAGCGCA
AGGCCAAGGGTGACATTCCATTCTTTGTGAACGCCACTGCCGGCACCACT
GTGCTGGGTGCCTTCAATGATATCAACACGATTGCGGATATCTGCCAAAA
TACAACTGCTGGATGCACATCGATGCTGCTTGGGGCGGTGGATTGTTGAT
GTCGCGTAAGCATCGTCATCCAGATTTACTGGTGTGAGCGTGCCGATTCG
GTCACCTGAAATCCCCACAAGCTCATGGGAGCCCTGCTCAGTGCTCCACG
ATCCATTTCAAGAAGAATGGCCTGTCATCAGCTGCATCGATGTCGGCGGA
GTATTCTTCATGACCGACAAGCAGTAATGACTTAGCTACGAACCTGGCGA
CAGGTGAATCCAGTGCGGCCGCCACACGACATCTTCAACTGTGATCGTGG
GGTAGCCTAAGCTCGACAAACGACCGGCTAGGAACTGCCGCATCAATTGG
AAGACCATCTCGAGAAGATCGAG

FMO05614.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
Gad1-RD 3017 CG14994-RD 197..1341 9..1143 5265 98.2 Plus
Gad1-RC 3151 CG14994-RC 331..1475 9..1143 5265 98.2 Plus
Gad1-RA 3050 CG14994-RA 230..1374 9..1143 5265 98.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4078925..4079495 875..306 2775 99.5 Minus
3L 28110227 3L 4082402..4082640 307..69 1195 100 Minus
3L 28110227 3L 4076798..4076878 1019..940 310 95.1 Minus
3L 28110227 3L 4084730..4084790 69..9 305 100 Minus
3L 28110227 3L 4078756..4078817 935..875 260 98.4 Minus
3L 28110227 3L 4075816..4075917 1138..1039 230 86.3 Minus
Blast to na_te.dros performed on 2014-11-28 19:55:51 has no hits.

FMO05614.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:08 Download gff for FMO05614.5prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 222..1374 2..1143 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:40 Download gff for FMO05614.5prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RC 307..1459 2..1143 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:13 Download gff for FMO05614.5prime
Subject Subject Range Query Range Percent Splice Strand
Gad1-RA 222..1374 2..1143 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:13 Download gff for FMO05614.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4075810..4075940 1019..1143 91 <- Minus
3L 4076799..4076877 941..1018 94 <- Minus
3L 4078750..4078817 875..940 97 <- Minus
3L 4078926..4079494 307..874 99 <- Minus
3L 4082403..4082639 70..306 100 <- Minus
3L 4084730..4084795 2..69 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:08 Download gff for FMO05614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4075810..4075940 1019..1143 91 <- Minus
arm_3L 4076799..4076877 941..1018 94 <- Minus
arm_3L 4078750..4078817 875..940 97 <- Minus
arm_3L 4078926..4079494 307..874 99 <- Minus
arm_3L 4082403..4082639 70..306 100 <- Minus
arm_3L 4084730..4084795 2..69 94   Minus