Clone FMO05615 Report

Search the DGRC for FMO05615

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:56
Well:15
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3838-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05615.5prime Sequence

1264 bp (893 high quality bases) assembled on 2008-08-25

> FMO05615.5prime
CAGTCGACATGACCACCTCAACCCGCAGCAGCAGCAACAACCACAGCAGC
GAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAACCACCACAG
TCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGGATCCACCA
ACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCGTCAACCTG
GTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAGTACCGCAA
CAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGAGACAAGAG
AAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGGCCTGCCTA
TCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCACAAGCCATA
CTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAAGTCCAGCC
GTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACCAGATGTCC
CAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCACTCCATGC
GACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAATAATAATA
ATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGGAGATGAAG
TACTCGATATCGGGAGAAGGACGATGAGGAGACCATCGACGCCTTTGATC
CCGCGGTTACCAACACCCTGGGTATGAAATCGTACTTCGTCCACGCCCAC
TCGCAGTTCTGCCTTCAAGGAGGCGGAGGCAATTCACCGGCCAGAAGCGA
TACCGCTAGTGCGGATAGCATGAAAAACTTCATTCCAGATGGTGCAGCTT
GGCCGAAACGGGCTCGCACTTATCTACAGCGATGGTGGACTGGCCACACA
AACGCCTCTGGCACTAACATCCGCACCTCGCATCAACATCCTTTGACATG
GTCCATGGATCATCACCCAGCATCCTACGACCGGGGGAGACGAAAAGAAA
TCAGACGAATGCGAGCCCCCACCACGATGCACAATGCAGAAGTATTACGG
CGACTGAGTCGTCGGAGTGGCGGACTGGAGTCTTCGCAACAATTCTCCCG
AGATCTGGCGACCTTCACTTCCAGAACGGTCCATGTCCAGATTGGCAATT
CGGGACCTATTAGCAAACGTGTAACCGATATCCGCTCAGATCCCACACGA
GAAGAGCATTCTGGCATATACGGAATGGGGCGTACACCAAGGGGGGGGAC
TGGTTATAATCTAA

FMO05615.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3838-RB 3091 CG3838-RB 1177..2292 9..1119 4750 96.4 Plus
CG3838-RA 2256 CG3838-RA 342..1457 9..1119 4750 96.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9571955..9572645 306..999 2855 97 Plus
2L 23513712 2L 9571509..9571754 9..254 1230 100 Plus
2L 23513712 2L 9571838..9571894 250..306 285 100 Plus
Blast to na_te.dros performed 2014-11-28 21:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6836 12..133 156 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6898 26..129 153 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6818..7027 13..229 150 55.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2431 8..99 143 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2433..2527 2..99 140 63.3 Plus
roo 9092 roo DM_ROO 9092bp 1054..1141 16..100 135 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2805..2887 26..99 125 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1535..1585 4..55 122 73.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6914 26..133 120 60.6 Plus

FMO05615.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:57 Download gff for FMO05615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 334..1468 1..1128 95   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:41 Download gff for FMO05615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RB 1123..2257 1..1128 95   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:09 Download gff for FMO05615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3838-RA 334..1468 1..1128 95   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:09 Download gff for FMO05615.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9571501..9571753 1..253 98 -> Plus
2L 9571842..9571894 254..306 100 -> Plus
2L 9571956..9572669 307..1021 96 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:57 Download gff for FMO05615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9571501..9571753 1..253 98 -> Plus
arm_2L 9571842..9571894 254..306 100 -> Plus
arm_2L 9571956..9572669 307..1021 96 -> Plus