FMO05615.5prime Sequence
1264 bp (893 high quality bases) assembled on 2008-08-25
> FMO05615.5prime
CAGTCGACATGACCACCTCAACCCGCAGCAGCAGCAACAACCACAGCAGC
GAGCACGAGGAGCGAACCTCCAACGGCACCACCGCCTACAACCACCACAG
TCCAACGGGTTCGGGATCCGGAACAGCAGGCGCCTCTATTGGATCCACCA
ACCGAGTGATGCAGGCGGACGAGGACTTCAACATCCGCTTCGTCAACCTG
GTGCGCACCCACAAGTGTCTCTACGACAAGAAGGTGCCCGAGTACCGCAA
CAGGGATAATCAGGAAAAGGCTTGGGTGCTTATTTCAAAGGAGACAAGAG
AAAGCGTGATCCATTGCAAGGAGCGATGGCGAAACCTTCGGGCCTGCCTA
TCCCGCTACATAAAGCAGCAATCCGGATCGGAGCCGCAGCACAAGCCATA
CTACCTGACCGAGCACATGGCGTTCCTGCTGCCCTTCCTGAAGTCCAGCC
GTAACTCTTTGGAGGGGAACAACAGTCTGGCCACTCTGTACCAGATGTCC
CAGCAGCATTTGCAGCATCAACCATTTCTCCTGCATCCAGCACTCCATGC
GACCGAGGAGCACAAGTACTGCGCCAACACTAGCATCAATAATAATAATA
ATAACAACGACGTCCATAATGGTGAGAGTATGGAGGTCTTGGAGATGAAG
TACTCGATATCGGGAGAAGGACGATGAGGAGACCATCGACGCCTTTGATC
CCGCGGTTACCAACACCCTGGGTATGAAATCGTACTTCGTCCACGCCCAC
TCGCAGTTCTGCCTTCAAGGAGGCGGAGGCAATTCACCGGCCAGAAGCGA
TACCGCTAGTGCGGATAGCATGAAAAACTTCATTCCAGATGGTGCAGCTT
GGCCGAAACGGGCTCGCACTTATCTACAGCGATGGTGGACTGGCCACACA
AACGCCTCTGGCACTAACATCCGCACCTCGCATCAACATCCTTTGACATG
GTCCATGGATCATCACCCAGCATCCTACGACCGGGGGAGACGAAAAGAAA
TCAGACGAATGCGAGCCCCCACCACGATGCACAATGCAGAAGTATTACGG
CGACTGAGTCGTCGGAGTGGCGGACTGGAGTCTTCGCAACAATTCTCCCG
AGATCTGGCGACCTTCACTTCCAGAACGGTCCATGTCCAGATTGGCAATT
CGGGACCTATTAGCAAACGTGTAACCGATATCCGCTCAGATCCCACACGA
GAAGAGCATTCTGGCATATACGGAATGGGGCGTACACCAAGGGGGGGGAC
TGGTTATAATCTAA
FMO05615.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3838-RB | 3091 | CG3838-RB | 1177..2292 | 9..1119 | 4750 | 96.4 | Plus |
CG3838-RA | 2256 | CG3838-RA | 342..1457 | 9..1119 | 4750 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:25:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9571955..9572645 | 306..999 | 2855 | 97 | Plus |
2L | 23513712 | 2L | 9571509..9571754 | 9..254 | 1230 | 100 | Plus |
2L | 23513712 | 2L | 9571838..9571894 | 250..306 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:25:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6836 | 12..133 | 156 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6898 | 26..129 | 153 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6818..7027 | 13..229 | 150 | 55.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2337..2431 | 8..99 | 143 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2433..2527 | 2..99 | 140 | 63.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1054..1141 | 16..100 | 135 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2805..2887 | 26..99 | 125 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1535..1585 | 4..55 | 122 | 73.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6914 | 26..133 | 120 | 60.6 | Plus |
FMO05615.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:57 Download gff for
FMO05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 334..1468 | 1..1128 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:41 Download gff for
FMO05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RB | 1123..2257 | 1..1128 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:09 Download gff for
FMO05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3838-RA | 334..1468 | 1..1128 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:09 Download gff for
FMO05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9571501..9571753 | 1..253 | 98 | -> | Plus |
2L | 9571842..9571894 | 254..306 | 100 | -> | Plus |
2L | 9571956..9572669 | 307..1021 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:57 Download gff for
FMO05615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9571501..9571753 | 1..253 | 98 | -> | Plus |
arm_2L | 9571842..9571894 | 254..306 | 100 | -> | Plus |
arm_2L | 9571956..9572669 | 307..1021 | 96 | -> | Plus |