FMO05618.5prime Sequence
1176 bp (726 high quality bases) assembled on 2008-08-25
> FMO05618.5prime
CAATCCACATGTCCACCGCATCGTCGAGCAACTCCAGCGGCGAGGAGGCC
AACAAAAAGTCCGGCTCCAACAACGAGGAGAGCTCCCACCTGCTGGAATC
CGCCGAAAATGGAGCCAAGTACGGCTCCAGACAGCCGGTCAAAATCGTCA
AAGCCAGCGATAATGGACGCACCAGCTCCACACCACATGATCAGGAGAAT
CTACTGGGCAACATGGTGCACACGTCTACTTCGAATAACTCCCAGAAGTG
GCCACTATATGTGGCCGCATTGGCCGCTGCTGGTGGCGCCTTCGCCGCCG
GTACCGTCCTGGGTTGGACATCGCCGGCCGAAACGGAGATCGTGGATCGC
GGCGAAGGATACGATTTCCCTGTCGACAAGGATCAGTTTTCGTGGGTAGG
ATCTGCCATGACCCTGGGTGCCGCCTGTGTGTGCATTCCCATTGGCTTCC
TGATCAACATGATTGGCCGAAAGTGGACCATGCTGTTTCTGGTGCTGCCC
TTCATTCTCGGTTGGACCATGCTCATCTGGGCGGTCAATGTCAGTATGCT
GTATGCCTCGCGCTTCATCCTCGGTATCGCCGGTGGAGCTTTCTGTGTGA
CCGCTCCCATGTACACGGGTGAGATTGCTCAGAAGGAGATTCGCGGAACG
CTGGGCAGCTTCTTCCATTGATGATAACCATTGGTATCCTGTTCGTCTAT
GCCGTCTGAGCTGGTGTGAAAATATTCTAGGTGAGCATCATTTGCGGCAT
TCTGCCCCTCATCTTTGGCGCATCTTCTTTTTCATGCCGGAATCGCCCAC
CTACTTGGTTTCCAAGATCGGTCTGAGAACGCCATCAGTCCATTCATGGC
TGCGTGGCAGGAATACATTACAACCAAGCTGGTGGAGCTGCGTGAAACCG
ACCGAGAAACAAAGACAATAAGACAACGTGTGGGCTGCTCTGAACCGACC
CGTCACCTGAAGCTTGGCCATCAGCATGGTCTTATGTACTTCAGCAGGTC
TGCAGAATCAATGCTGTAATTTTCATACCTTCAAGATCTTTAGAAACAAA
CTAGACATCAAGAATGAATGGGCAGCATTCTGATCGGATCTGCATGGGCA
CTTACGCTCCCCACTGATAGTAACATATTGGGGCGTCAACAGTGTTGTGG
CGCCAGAAATTTCATAGCCATATCCA
FMO05618.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10960-RB | 2968 | CG10960-RB | 490..1539 | 9..1041 | 4525 | 96.6 | Plus |
| CG10960-RC | 2664 | CG10960-RC | 365..1235 | 188..1041 | 3630 | 95.9 | Plus |
| CG10960-RA | 2355 | CG10960-RA | 57..926 | 189..1041 | 3625 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12826960..12827582 | 809..189 | 2955 | 99 | Minus |
| 3L | 28110227 | 3L | 12831882..12832062 | 189..9 | 905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:54 has no hits.
FMO05618.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:48 Download gff for
FMO05618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 482..1539 | 1..1041 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:33:45 Download gff for
FMO05618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 430..1487 | 1..1041 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:14 Download gff for
FMO05618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10960-RB | 482..1539 | 1..1041 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:14 Download gff for
FMO05618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12826962..12827582 | 189..807 | 99 | <- | Minus |
| 3L | 12831883..12832069 | 1..188 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:48 Download gff for
FMO05618.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12824983..12825169 | 1..188 | 97 | | Minus |
| arm_3L | 12820062..12820682 | 189..807 | 99 | <- | Minus |
